View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1483_low_9 (Length: 245)
Name: NF1483_low_9
Description: NF1483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1483_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8226092 - 8225869
Alignment:
| Q |
1 |
aaatcacaaactttattatacataatacacaaattcttatctattgagacacctcaccaacacgtattcttttctctatcagaaaaaagataactttgaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
8226092 |
aaattacaaactttattatacataatacacaaattcttatctattgagacacctcaccaacacgtattcttttctctatcaaaaaaaagataactttaaa |
8225993 |
T |
|
| Q |
101 |
ctcgttataaatatatgagttcattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaaaaattgtgagaatgttgcttcac |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8225992 |
ctcgttataaatatatgagtttattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaaaaattgtgagattgttgcttcac |
8225893 |
T |
|
| Q |
201 |
taattccctgtcgtttgtctatgt |
224 |
Q |
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||||||| |||| ||||||||||| |
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| T |
8225892 |
taattccgtgtcatttgtctatgt |
8225869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 8214583 - 8214379
Alignment:
| Q |
1 |
aaatcacaaactttattatacataatacacaaattcttatctattgagacacctcaccaacacgtattcttttctctatcagaaaaaagataactttgaa |
100 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |
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| T |
8214583 |
aaattacaaactttattatatataatacacaaattcttatctattgagacacctcaccaatatgtattattttctctatcagaaaaaagataactttgaa |
8214484 |
T |
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| Q |
101 |
ctcgttataaatatatgagttcattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaaaaattgtgagaatgttgcttcac |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8214483 |
ctcgttataaatatatgagtttattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaaaaattgtgagaatgttgcttcac |
8214384 |
T |
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| Q |
201 |
taatt |
205 |
Q |
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||||| |
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| T |
8214383 |
taatt |
8214379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 8236755 - 8236589
Alignment:
| Q |
10 |
actttattatacataatacacaaattcttatctattgagacacctcaccaacacgtattcttttctctatcagaaaaaagataactttgaactcgttata |
109 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
8236755 |
actttattatatgtaatacacaaattcttatctattgagacacctcatcaacacgtgtccttttctctatcagaaaaa-gataactttaaactcgttata |
8236657 |
T |
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| Q |
110 |
aatatatgagttcattctcatctttgacatcacttataatgacaaatccaatttcttcaaacctttaa |
177 |
Q |
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||||||| ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
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| T |
8236656 |
aatatataagttcattctcatctttgacaccatttataatgataaatccaatttcttcaaacctttaa |
8236589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 8236552 - 8236502
Alignment:
| Q |
179 |
aattgtgagaatgttgcttcactaattccctgtcgtttgtctatgtcttta |
229 |
Q |
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|||||||||| |||||||||||||||||| |||| |||||||||||||||| |
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| T |
8236552 |
aattgtgagattgttgcttcactaattccttgtcatttgtctatgtcttta |
8236502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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