View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-10 (Length: 574)
Name: NF1484-Insertion-10
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 8 - 574
Target Start/End: Original strand, 4951730 - 4952295
Alignment:
| Q |
8 |
aagtaaaatgtagcaggtggatggatcatagaaaattaaaaagaaggaacatagagtaatttatatctttataatggaaactggaaaatagtctcatctc |
107 |
Q |
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| T |
4951730 |
aagtaaaatatagcaggtggatggatcatagaaagttaaaaagaaggaacatagagtaatttatatctttataatggaaactagaaaatagtctcatctc |
4951829 |
T |
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| Q |
108 |
attctcaatcatgaattttagaggaatcatctttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaat |
207 |
Q |
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| T |
4951830 |
attctcaatcatgaattttagaggaatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaat |
4951929 |
T |
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| Q |
208 |
ttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagacgtgtattctcttgaacaactttgtcatgggactcagacacatggtttagt |
307 |
Q |
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| T |
4951930 |
ttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagtcgtgcattctcttgaacaactgtgtcatgtgactcagacacatggtttagt |
4952029 |
T |
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| Q |
308 |
ttgtcaacaaggttgtgattttcagttctgagtttcatcacttgtgaccaaagttcatccaagtgtttttgttttctcatccttgatctcctagctgatt |
407 |
Q |
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| T |
4952030 |
ttgtcaacaaggttgtgattttcagttctgagtttcatcacttgtgaccaaagttcatccaagtgtttttgtttcctcatccttgatctcctagctgatt |
4952129 |
T |
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| Q |
408 |
ctctgtttgatatcattcgtcggtgcttcctttcgtcgatgatgttaaactgaagttcatctgcttcatcagaagtagttgagttgctgcttaaacatga |
507 |
Q |
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| T |
4952130 |
ctctgtttgatatcattcgtcggtgcttcctttcatcgatgatgttaaactgaagttcatctgcttcatcagaagtagttgagttgctgcttaaacatga |
4952229 |
T |
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| Q |
508 |
tgggtaatggaagttttggtaagctgcctaaaagattatttatatggtaatttggaatttcattctg |
574 |
Q |
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| T |
4952230 |
tgggtaatggaag-tttggtaagctgcctaaaagattatttatatggtaatttggaatttcattctg |
4952295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 110 - 507
Target Start/End: Complemental strand, 10483843 - 10483443
Alignment:
| Q |
110 |
tctcaatcatgaattttagaggaatcatc---tttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
206 |
Q |
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| T |
10483843 |
tctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
10483744 |
T |
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| Q |
207 |
tttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagacgtgtattctcttgaacaactttgtcatgggactcagacacatggtttag |
306 |
Q |
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| T |
10483743 |
tttgcatgtcagctaccatttggcgaagatcaaaagtttcttccttaagtcttgcattctcttgaacaactttgtcatgtgactcagacacatggtttag |
10483644 |
T |
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| Q |
307 |
tttgtcaacaaggttgtgattttcagttctgagtttcatcacttgtgaccaaagttcatccaagtgtttttgttttctcatccttgatctcctagctgat |
406 |
Q |
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| T |
10483643 |
tttatcaacaaggttatgattttcagttctgagtctcaccacttgtgaccaaagttcatctaagtgcttttgtttcctcatccttgatctcctagctgat |
10483544 |
T |
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| Q |
407 |
tctctgtttgatatcattcgtcggtgcttcctttcgtcgatgatgttaaactgaagttcatctgcttcatcagaagtagttgagttgctgcttaaacatg |
506 |
Q |
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| T |
10483543 |
tctctatttgatatcattcgtcggtgcttcctttcgtcgatgatattgaactgaagttcatctgcttcatcagaagtagttgagttgctacttaaacatg |
10483444 |
T |
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| Q |
507 |
a |
507 |
Q |
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| T |
10483443 |
a |
10483443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 505 - 574
Target Start/End: Complemental strand, 10483415 - 10483347
Alignment:
| Q |
505 |
tgatgggtaatggaagttttggtaagctgcctaaaagattatttatatggtaatttggaatttcattctg |
574 |
Q |
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| T |
10483415 |
tgatgggtaatggaagttt-ggtaaagtacctaaaatattacttagatggtaatttggaatttcattctg |
10483347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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