View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484-Insertion-11 (Length: 555)

Name: NF1484-Insertion-11
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484-Insertion-11
NF1484-Insertion-11
[»] chr4 (13 HSPs)
chr4 (8-352)||(23408328-23408672)
chr4 (387-521)||(23408192-23408326)
chr4 (8-137)||(23415712-23415841)
chr4 (8-136)||(23453376-23453504)
chr4 (8-136)||(23868878-23869006)
chr4 (8-136)||(23885973-23886101)
chr4 (8-136)||(24307369-24307497)
chr4 (8-136)||(23402220-23402348)
chr4 (8-136)||(26434170-26434298)
chr4 (8-136)||(26832881-26833009)
chr4 (8-136)||(26435950-26436078)
chr4 (10-136)||(34662045-34662171)
chr4 (8-84)||(23451788-23451864)
[»] chr1 (4 HSPs)
chr1 (11-125)||(33216594-33216708)
chr1 (8-113)||(41670546-41670651)
chr1 (58-136)||(45576399-45576477)
chr1 (61-113)||(29391665-29391717)
[»] chr7 (2 HSPs)
chr7 (11-134)||(47317431-47317554)
chr7 (10-113)||(40180297-40180400)
[»] chr2 (1 HSPs)
chr2 (46-98)||(14715433-14715485)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 23408672 - 23408328
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23408672 acaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaa 23408573  T
Q  108 ggctgtgactaagtttacaagctcttagacatttcgtttatgtttattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgtt 207  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23408572 ggctgtgactaagtttactagctcttagacatttcgattatgtttattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgtt 23408473  T
Q  208 gatgtcttttgtgtaagaaatggagttaatgatatttgacttgaaaattgcttgtagaattgggtttctctctgttttgaatgattgatctaggggtatc 307  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23408472 gatgtcttttgtgtaagaaatggagttaatgatatttgacatgaaaattgcttgtagaattgggtttctctctgttttgaatgattgatctaggggtatc 23408373  T
Q  308 aaagactgaatacattttctcataaaatatagttggattcctcct 352  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  23408372 aaagacggaatacattttctcataaaatatagttggattcctcct 23408328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 387 - 521
Target Start/End: Complemental strand, 23408326 - 23408192
Alignment:
Q  387 tgtggattgtgattgtttataattaatcaattttattgacactgtaatttgatcttggcttagatgcaaaattaaggatgttttttgctgtaattctgca 486  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  23408326 tgtgggttgtgattgtttataattaatcaattttactgacactgtaatttgatcttggctgagatgcaaaattaaggatgttttttgctgtaattgtgca 23408227  T
Q  487 gaagatatctgctatatgtttaattataagtggac 521  Q
    |||||||||||||||||||||||||||||||||||    
T  23408226 gaagatatctgctatatgtttaattataagtggac 23408192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 23415841 - 23415712
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  23415841 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaa 23415742  T
Q  108 ggctgtgactaagtttacaagctcttagac 137  Q
    |||||||||||||||||| |||||||||||    
T  23415741 ggctgtgactaagtttactagctcttagac 23415712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 23453504 - 23453376
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23453504 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 23453405  T
Q  108 ggctgtgactaagtttacaagctcttaga 136  Q
    ||||||||| |||||||| || |||||||    
T  23453404 ggctgtgaccaagtttactagttcttaga 23453376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 23868878 - 23869006
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||    
T  23868878 acaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaa 23868977  T
Q  108 ggctgtgactaagtttacaagctcttaga 136  Q
     |||||||||||||| || || |||||||    
T  23868978 agctgtgactaagttcactagttcttaga 23869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 23885973 - 23886101
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  23885973 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaa 23886072  T
Q  108 ggctgtgactaagtttacaagctcttaga 136  Q
     |||||||| |||||||| || |||||||    
T  23886073 agctgtgaccaagtttactagttcttaga 23886101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 24307369 - 24307497
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  24307369 acaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaa 24307468  T
Q  108 ggctgtgactaagtttacaagctcttaga 136  Q
     |||||||| ||||| || || |||||||    
T  24307469 agctgtgaccaagttcactagttcttaga 24307497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 23402220 - 23402348
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || || |||||    
T  23402220 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaa 23402319  T
Q  108 ggctgtgactaagtttacaagctcttaga 136  Q
     |||||||| |||||||| || |||||||    
T  23402320 agctgtgaccaagtttactagttcttaga 23402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 26434170 - 26434298
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || |||||    
T  26434170 acaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaa 26434269  T
Q  108 ggctgtgactaagtttacaagctcttaga 136  Q
    |||||| ||||||||||| || |||||||    
T  26434270 ggctgtcactaagtttactagttcttaga 26434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 26832881 - 26833009
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || |||||    
T  26832881 acaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaa 26832980  T
Q  108 ggctgtgactaagtttacaagctcttaga 136  Q
    |||||| ||||||||||| || |||||||    
T  26832981 ggctgtcactaagtttactagttcttaga 26833009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 26435950 - 26436078
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||| ||||||||| || |||||    
T  26435950 acaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaa 26436049  T
Q  108 ggctgtgactaagtttacaagctcttaga 136  Q
    |||||| ||||||||||| || |||||||    
T  26436050 ggctgtcactaagtttaccagttcttaga 26436078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 34662171 - 34662045
Alignment:
Q  10 aacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaagg 109  Q
    ||||||||||| || || ||||| ||||||||||||||||| || || |||||||||||||| |||||||| ||||||||||| ||||| || ||||| |    
T  34662171 aacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaag 34662072  T
Q  110 ctgtgactaagtttacaagctcttaga 136  Q
    |||| || ||||||||||| |||||||    
T  34662071 ctgtaacgaagtttacaagttcttaga 34662045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 23451864 - 23451788
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaag 84  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||    
T  23451864 acaacaagaagccaacaatcacttcaagggaaattcagaccgcagtcaggcttgttctgcccggtgaattggccaag 23451788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 33216594 - 33216708
Alignment:
Q  11 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc 110  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||    
T  33216594 acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc 33216693  T
Q  111 tgtgactaagtttac 125  Q
    |||||| ||||||||    
T  33216694 tgtgaccaagtttac 33216708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 41670546 - 41670651
Alignment:
Q  8 acaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaa 107  Q
    ||||||||||||| |||||||||||  |||| || |||||||| ||  | |||||||| || |||||| | || ||||||||||| ||||| || |||||    
T  41670546 acaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgttctccccggtgaacttgctaagcatgctgtctctgagggaaccaa 41670645  T
Q  108 ggctgt 113  Q
    ||||||    
T  41670646 ggctgt 41670651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
Q  58 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 136  Q
    |||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || |||||||||||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga 45576477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 29391665 - 29391717
Alignment:
Q  61 gttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 113  Q
    |||||||| ||||||||||| || ||||||||||| ||||| |||||||||||    
T  29391665 gttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
Q  11 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc 110  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| ||    
T  47317431 acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc 47317530  T
Q  111 tgtgactaagtttacaagctctta 134  Q
    |||||| |||||||| || |||||    
T  47317531 tgtgaccaagtttactagttctta 47317554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 40180400 - 40180297
Alignment:
Q  10 aacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaagg 109  Q
    ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | ||||||||||| |||||||| || ||||||||||||||||| || ||||    
T  40180400 aacaagaagccgacgattacttctagggagattcaaactgctgttagattggttcttcctggagaattggctaaacatgctgtttctgaagggactaagg 40180301  T
Q  110 ctgt 113  Q
    ||||    
T  40180300 ctgt 40180297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
Q  46 actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga 98  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| |||||    
T  14715433 actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga 14715485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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