View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-12 (Length: 525)
Name: NF1484-Insertion-12
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-12 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 89 - 418
Target Start/End: Original strand, 28241635 - 28241949
Alignment:
| Q |
89 |
atgtaatcatagtctcatactcaaacactacatgaaagacataaccttcaacttattttatatttggctttcagttaaaaataagagcagcaaacatact |
188 |
Q |
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| T |
28241635 |
atgtaatcatagtctcatactcaaacactacatgaaagacataaccttcaacttattttatatttggcttgcagttaaaaataagagcagcaaacatact |
28241734 |
T |
|
| Q |
189 |
gatggattcttcagatatttcaatagaaatagcagtctcgcaaagaatacttatagttaccctttgttgattgacccctgccatctgcagtaaccaaaat |
288 |
Q |
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| T |
28241735 |
gatggattcttcag--atttcaatagaaatagcagtctcgcaaagaatacttatagttaccctttgttgattgacccctgccatctgcagtaaccaaaat |
28241832 |
T |
|
| Q |
289 |
gtatcccttgcggcacaccttgcgagcaaatattttaacacacattggataagggttcactaatagcacaaagttaaaagtaaaaaattgaaagaatcca |
388 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28241833 |
gtatc------------ccttgcgagcaaatattttaacacacattagataagggttcactaatagcacaaagtt-aaagtaaaaaattgaaagaatcca |
28241919 |
T |
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| Q |
389 |
accttttgttaagtaaaagagtaagaactt |
418 |
Q |
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| T |
28241920 |
accttttgttaagtaaaagagtaagaactt |
28241949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 151 - 298
Target Start/End: Original strand, 2370241 - 2370385
Alignment:
| Q |
151 |
tttggctttcagttaaaaataagagcagcaaacatactgatggattcttcagatatttcaatagaaatagcagtctcgcaaagaatacttatagttaccc |
250 |
Q |
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| T |
2370241 |
tttggcttgcaggtaaaactaagagcatcaaacatactgatggattctttaggt--ttcaatggacatagcagtctggcaaagaatacttatagttatcc |
2370338 |
T |
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| Q |
251 |
tttgttgattgacccctgccatctgcagtaaccaaaatgtatcccttg |
298 |
Q |
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| T |
2370339 |
tttgttgattga-tcctgccatttgcagtaaccaaaatgtatcccttg |
2370385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 337 - 477
Target Start/End: Complemental strand, 309130 - 308994
Alignment:
| Q |
337 |
ataagggttcactaatagcacaaagttaaaagt--aaaaaattgaaagaatccaaccttttgttaagtaaaagagtaagaacttcctctcagcctcgaat |
434 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || |
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| T |
309130 |
ataagggttcactaatagcacaaagt---aagtaaaaaaaattgaaagaatccaaccttttgttgagtaaaagagtaagaacttcctctcagcttcaaa- |
309035 |
T |
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| Q |
435 |
agatgactataaatgaatcgaatcctatagtctctctgagtag |
477 |
Q |
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|| | ||| |||||||| |||||||| |||||||||||||| |
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| T |
309034 |
--atcaatatcaatgaatcaaatcctatggtctctctgagtag |
308994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 525
Target Start/End: Complemental strand, 308300 - 308254
Alignment:
| Q |
479 |
ggggaaaacatttatgatagagcaaaaatgttatgtcagcttcacgg |
525 |
Q |
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| T |
308300 |
ggggaaaacatttatgttagagcaaaaaggttacctcagcttcacgg |
308254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 55438034 - 55437970
Alignment:
| Q |
229 |
caaagaatacttatagttaccctttgttgattgacccctgccatctgcagtaaccaaaatgtatcc |
294 |
Q |
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||||||||||||| || ||||| ||||||||||| ||| |||| ||||||||||||||||||||| |
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| T |
55438034 |
caaagaatacttacagctacccgttgttgattgatccca-ccatttgcagtaaccaaaatgtatcc |
55437970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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