View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-13 (Length: 696)
Name: NF1484-Insertion-13
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-13 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 8 - 696
Target Start/End: Complemental strand, 43829014 - 43828326
Alignment:
| Q |
8 |
taaacaatgaatatatatacataactcaatttcacaataacaagnnnnnnngttaatctttcaaataagaaaaaagtagcaatataagttatcaatacat |
107 |
Q |
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| T |
43829014 |
taaacaatgaatatatatacataactcaatttcacaataacaagaaaaaaagttaatctttcaaataagaaaaaagtagcaatataagttatcaatacat |
43828915 |
T |
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| Q |
108 |
gaagatggttatatttatatacaaaggatttcaaagagggnnnnnnntgattaattagtagttaatttagtttttggttaggcttgattatttcgattga |
207 |
Q |
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| T |
43828914 |
gaagatggttatatttatatacaaaggatttcaaagagggaaaaaaatgattaattagtagttaatttagtttttggttaggcttgattatttcgattga |
43828815 |
T |
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| Q |
208 |
ttaaaattacgcagatgaaacnnnnnnnaagcatgtctgtttagttggccgagtggttagaggattatgagcagcatccatgtcaactggtttgaatccg |
307 |
Q |
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| T |
43828814 |
ttaaaattacgcagatgaaactttttttaagcatgtctgtttagttggccgagtggttagaggattatgagtagcatccatgtcaactggtttgaatccg |
43828715 |
T |
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| Q |
308 |
tctaaccatatttctggaannnnnnngaagcattcatttaatatttattccggtcggttcgcttcgggttataggggttcatcagttcgaccagttttct |
407 |
Q |
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| T |
43828714 |
tctaaccatatttctggaatttttttgaagcattcatttaatatttattccggtcggttcgtttcgggttataggggttcatcagttcgaccaattttct |
43828615 |
T |
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| Q |
408 |
tgcatatacggtctgttatctagatcgaaccagacatctctccggttctctgttggaccggtccgaccgaccggttcggtttggattttaaaacaatgat |
507 |
Q |
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| T |
43828614 |
tgcatatacggtctgttatctagatcgaaccagacatccctccgattctctgttggaccggtccgaccgaccggttcggtctggattttaaaacaataat |
43828515 |
T |
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| Q |
508 |
tagaaactatgaatttattgaaacgtggtaaaataaaccaattcaacaattgagatctggtcaaaccaaagtttaaagtctaattatgaggtgtgttcac |
607 |
Q |
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| T |
43828514 |
tacaaactatgaatttattgaaacgtggtaaaataaatcaattcaacaattgagatctggtcaaaccaaagtttaaagtctaattatgaggtgtgttcac |
43828415 |
T |
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| Q |
608 |
atttcttttgnnnnnnnnaagggagatgtgtgttcacatttaggctttgtttgaatagatgaaacaaaa-caagtagagctaaatgaagt |
696 |
Q |
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| T |
43828414 |
atttcttttgtttttttt-agggagatgtgtgttcacatttaggctttgtttgaatagatgaaacaaaataaagtagagctaaatgaagt |
43828326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 564
Target Start/End: Complemental strand, 43840946 - 43840887
Alignment:
| Q |
506 |
attagaaactatgaatttattgaaacgtggtaaaataaaccaattcaa-caattgagatc |
564 |
Q |
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| T |
43840946 |
attaggaattatgaatttattgaaatgtgataaaataagccaattcaagcaattgagatc |
43840887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 507
Target Start/End: Original strand, 71752 - 71795
Alignment:
| Q |
464 |
accggtccgaccgaccggttcggtttggattttaaaacaatgat |
507 |
Q |
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| T |
71752 |
accggtccgaccgaccgggtcggtctgggttttaaaacaatgat |
71795 |
T |
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