View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-14 (Length: 645)
Name: NF1484-Insertion-14
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-14 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 7 - 628
Target Start/End: Complemental strand, 1006617 - 1005999
Alignment:
| Q |
7 |
agtaactctcaaagtgcatggctccatttcctgcataattcgggacaaccacgttaataagtctagttaaagaataataattaaaccctaacagctttcg |
106 |
Q |
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| T |
1006617 |
agtaactctcaaagtgcatggctccatttcctgcataattcgggacaaccacgttaataagtctagctaaagaataataattaaaccctaacagctttcg |
1006518 |
T |
|
| Q |
107 |
tgaccctcctaaaccccacctttgaccaaacactccactttaccctcttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaat |
206 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1006517 |
cgaccctc-taaaccccacctttgaccaaacactccactttaccctcttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaat |
1006419 |
T |
|
| Q |
207 |
gccctacaataaagtcttcgaaattctgnnnnnnnnntaatcttaaaattaaacctcggaaaaggaatagccacaaatttaagttaccatgaacaaatat |
306 |
Q |
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| T |
1006418 |
gccctacaataaagtcttcgaaattctgaaaaaaaa-taatcttaaaattaaacctcggaaaaggaatagccacaaatttaagttaccatgaacaaatat |
1006320 |
T |
|
| Q |
307 |
gcattttttctcttaaacaaacttgcaaaaccattatctgtttttctattttgaactctgccattctcacactaagtgacattgacttatcatgagagtt |
406 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1006319 |
gcattttttctcttaaacaaacttgcaaaaccactatctgtttttctattttgaactctgccattctcacactaagtgacattgacttatcatgagagtt |
1006220 |
T |
|
| Q |
407 |
tcattattttgttgaattttggtttcattaataagcgtagatttatttattgctcttctaacctggatattcttgtttgttgattgtgttatgaacatct |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1006219 |
tcattattttgttgaattttggtttcattaataagcgtagatttatttattgctcttctaacct-gatattcttgtttgttgattgtgttatgaacatct |
1006121 |
T |
|
| Q |
507 |
tcannnnnnnnnnnaacttgatagtttggacttattgggcgtgattgatcttgatggagacgatacatctaccactagaagaccc-aaattgattgtc-t |
604 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
1006120 |
tca--tttttttttaacttgatagtttggacttattgggcgtgattgatcttgatggagacgatacatctaccactagaagacccaaaattgattgtctt |
1006023 |
T |
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| Q |
605 |
ttgaaattgattgttggggtcttt |
628 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
1006022 |
ttgaaattgattgttggggtcttt |
1005999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 52474669 - 52474553
Alignment:
| Q |
118 |
aaccccacctttgaccaaacactccactttaccctcttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaata |
217 |
Q |
| |
|
||||||||||||||||||||| |||||| | | |||| |||||||||||| |||| ||| ||| |||||| ||||| ||||||||||||| |||| | |
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| T |
52474669 |
aaccccacctttgaccaaacatcccacttgagcaccttcaatgtatgcattgcctgccaccataatttcatgaacacggctgatgaaatgccccacaaca |
52474570 |
T |
|
| Q |
218 |
aagtcttcgaaattctg |
234 |
Q |
| |
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|| |||| ||||||||| |
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| T |
52474569 |
aaatctttgaaattctg |
52474553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 38792137 - 38792190
Alignment:
| Q |
181 |
aatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctg |
234 |
Q |
| |
|
|||||||||||||||| ||| ||||||| | |||| |||||| ||||||||||| |
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|
| T |
38792137 |
aatatcatgagcacggctgacgaaatgctccacaacaaagtcctcgaaattctg |
38792190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 21123631 - 21123679
Alignment:
| Q |
393 |
ttatcatgagagtttcattattttgttgaattttggtttcattaataag |
441 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||| || ||||||| |
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| T |
21123631 |
ttatcatgtcagttgcattattttgttgaattttggttgcactaataag |
21123679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 5838290 - 5838371
Alignment:
| Q |
153 |
cttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctg |
234 |
Q |
| |
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||||||||||||| ||| ||||| | |||||||||||||| ||| || ||||||||| || ||||| || || |||||||| |
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| T |
5838290 |
cttccatgtatgccttgcatgcccctagaatatcatgagctcggacgaggaaatgccccactataaaatcctcaaaattctg |
5838371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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