View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484-Insertion-15 (Length: 453)

Name: NF1484-Insertion-15
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484-Insertion-15
NF1484-Insertion-15
[»] chr3 (5 HSPs)
chr3 (7-178)||(23719416-23719587)
chr3 (7-178)||(23737872-23738043)
chr3 (7-178)||(23700961-23701132)
chr3 (7-178)||(23769325-23769496)
chr3 (176-284)||(35495298-35495405)
[»] chr1 (2 HSPs)
chr1 (179-320)||(29500326-29500464)
chr1 (216-284)||(31123283-31123351)
[»] chr6 (2 HSPs)
chr6 (179-320)||(14526792-14526933)
chr6 (176-205)||(23267270-23267299)
[»] chr8 (2 HSPs)
chr8 (177-309)||(40499432-40499564)
chr8 (231-284)||(39037402-39037456)
[»] chr7 (2 HSPs)
chr7 (178-259)||(12489526-12489606)
chr7 (175-285)||(43016427-43016535)
[»] chr4 (1 HSPs)
chr4 (177-284)||(23112121-23112224)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 23719587 - 23719416
Alignment:
Q  7 atgtttcatcacaaatttatctattaagatccttttttgtattctcattttacaaattgtttttatgagatttgtgatctacttaagatggttcaaaaga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23719587 atgtttcatcacaaatttatctattaagatccttttttgtattctctttttacaaattgtttttatgagatttgtgatctactcaagatggttcaaaaga 23719488  T
Q  107 ataatcttgtcaaaagttgactacgtcctcgatttttggtgatggttgaaggctcaaagactaatttcatta 178  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  23719487 ataatcttgtcaaaagttggctacgtcctagatttttggtggtggttgaaggctcaaagactaatttcatta 23719416  T

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Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 23738043 - 23737872
Alignment:
Q  7 atgtttcatcacaaatttatctattaagatccttttttgtattctcattttacaaattgtttttatgagatttgtgatctacttaagatggttcaaaaga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23738043 atgtttcatcacaaatttatctattaagatccttttttgtattctctttttacaaattgtttttatgagatttgtgatctactcaagatggttcaaaaga 23737944  T
Q  107 ataatcttgtcaaaagttgactacgtcctcgatttttggtgatggttgaaggctcaaagactaatttcatta 178  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  23737943 ataatcttgtcaaaagttggctacgtcctagatttttggtggtggttgaaggctcaaagactaatttcatta 23737872  T

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Target: chr3; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 23701132 - 23700961
Alignment:
Q  7 atgtttcatcacaaatttatctattaagatccttttttgtattctcattttacaaattgtttttatgagatttgtgatctacttaagatggttcaaaaga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  23701132 atgtttcatcacaaatttatctattaagatccttttttgtattctctttttagaaattgtttttatgagatttgtgatctactcaagatggttcaaaaga 23701033  T
Q  107 ataatcttgtcaaaagttgactacgtcctcgatttttggtgatggttgaaggctcaaagactaatttcatta 178  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  23701032 ataatcttgtcaaaagttggctacgtcctagatttttggtggtggttgaaggctcaaagactaatttcatta 23700961  T

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Target: chr3; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 23769496 - 23769325
Alignment:
Q  7 atgtttcatcacaaatttatctattaagatccttttttgtattctcattttacaaattgtttttatgagatttgtgatctacttaagatggttcaaaaga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23769496 atgtttcatcacaaatttatctattaagatccttttttgtattctctttttgcaaattgtttttatgagatttgtgatctactcaagatggttcaaaaga 23769397  T
Q  107 ataatcttgtcaaaagttgactacgtcctcgatttttggtgatggttgaaggctcaaagactaatttcatta 178  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23769396 ataatctggtcaaaagttggctacgtcctcgatttttggtggtggttgaaggctcaaagactaatttcatta 23769325  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 35495298 - 35495405
Alignment:
Q  176 ttaggaaaaagatacatagaccactcttttccaaacacctctttgtaccattgctgatgtggcaggggtagcttggtaatttcacgcgctagggatagtt 275  Q
    |||||||||||||||| ||||||||||     | ||||| ||||| |||| ||||||||||| |||||||| |||||||||||| ||  ||| | |||||    
T  35495298 ttaggaaaaagatacagagaccactctcaat-atacacccctttgcaccactgctgatgtggtaggggtagtttggtaatttcatgcaatagaggtagtt 35495396  T
Q  276 tggtagttt 284  Q
    |||||||||    
T  35495397 tggtagttt 35495405  T

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Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 29500464 - 29500326
Alignment:
Q  179 ggaaaaagatacatagaccactcttttccaaacacctctttgtaccattgctgatgtggcaggggtagcttggtaatttcacgcgctagggatagtttgg 278  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||   |||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  29500464 ggaaaaagatacatagaccactcttttccatacatctctttgtacca---ctgatgtggcaggggtagtttggtaatttcacgtgttagggatagtttgg 29500368  T
Q  279 tagttttcacaatctcttcctcttctctgtttgcagatccgt 320  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  29500367 tagttttcacaatctcttcctcttctctgttcgcagatccgt 29500326  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 31123283 - 31123351
Alignment:
Q  216 ctttgtaccattgctgatgtggcaggggtagcttggtaatttcacgcgctagggatagtttggtagttt 284  Q
    ||||||| || |||||||||||||| ||||| ||||||||||||| |  ||||| ||||||||||||||    
T  31123283 ctttgtatcactgctgatgtggcagaggtagtttggtaatttcacacaataggggtagtttggtagttt 31123351  T

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Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 14526933 - 14526792
Alignment:
Q  179 ggaaaaagatacatagaccactcttttccaaacacctctttgtaccattgctgatgtggcaggggtagcttggtaatttcacgcgctagggatagtttgg 278  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||| || ||||||  ||||||||| |||||||||||||||||||| |||||||||     
T  14526933 ggaaaaagatacatagaccactcttttctatacacccctttgtaccagtgttgatgttacaggggtagtttggtaatttcacgcgctagtgatagtttga 14526834  T
Q  279 tagttttcacaatctcttcctcttctctgtttgcagatccgt 320  Q
    |||||||| ||||||||||||||||||||||  |||||||||    
T  14526833 tagttttcgcaatctcttcctcttctctgttcacagatccgt 14526792  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 23267270 - 23267299
Alignment:
Q  176 ttaggaaaaagatacatagaccactctttt 205  Q
    ||||||||||||||||||||||||||||||    
T  23267270 ttaggaaaaagatacatagaccactctttt 23267299  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 309
Target Start/End: Original strand, 40499432 - 40499564
Alignment:
Q  177 taggaaaaagatacatagaccactcttttccaaacacctctttgtaccattgctgatgtggcaggggtagcttggtaatttcacgcgctagggatagttt 276  Q
    |||||||||||||||||||||||||||||| | || || ||||| |||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  40499432 taggaaaaagatacatagaccactcttttctatacgcccctttgcaccactgctgatgtggcaggggtagtttgataatttcacgcgatagggatagttt 40499531  T
Q  277 ggtagttttcacaatctcttcctcttctctgtt 309  Q
    ||||||||| |||||||||| ||||||| ||||    
T  40499532 ggtagtttttacaatctctttctcttctttgtt 40499564  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 39037456 - 39037402
Alignment:
Q  231 gatgtggcaggggtagcttggtaatttcacgcgct-agggatagtttggtagttt 284  Q
    ||||||||| |||||| |||||||||||||||| | |||| ||||||||||||||    
T  39037456 gatgtggcaagggtagtttggtaatttcacgcgataaggggtagtttggtagttt 39037402  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 12489526 - 12489606
Alignment:
Q  178 aggaaaaagatacatagaccactcttttccaaacacctctttgtaccattgctgatgtggcaggggtagcttggtaatttca 259  Q
    ||||||||||||||||||||||| |||   | ||||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  12489526 aggaaaaagatacatagaccact-tttaatatacacccctttgtaccactgctgatgtggcaggggtagtttggtaatttca 12489606  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 43016427 - 43016535
Alignment:
Q  175 attaggaaaaagatacatagaccactcttttccaaacacctctttgtaccattgctgatgtggcaggggtagcttggtaatttcacgcgctagggatagt 274  Q
    ||||||||||||||||||||||||| | |||    || || |||||||||| |||||||||||||||||||| ||| ||||||||   ||||||| ||||    
T  43016427 attaggaaaaagatacatagaccac-catttgtgtac-ccactttgtaccactgctgatgtggcaggggtagattgctaatttcatatgctaggggtagt 43016524  T
Q  275 ttggtagtttt 285  Q
    |||||||||||    
T  43016525 ttggtagtttt 43016535  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 23112121 - 23112224
Alignment:
Q  177 taggaaaaagatacatagaccactcttttccaaacacctctttgtaccattgctgatgtggcaggggtagcttggtaatttcacgcgctagggatagttt 276  Q
    ||||||||||||||||||||||||||   | | | ||| |||||||||| ||||||||||| |||||| | ||| |||||||||||  ||| | ||||||    
T  23112121 taggaaaaagatacatagaccactct---caatatacc-ctttgtaccactgctgatgtggtaggggtggtttgataatttcacgcaatagaggtagttt 23112216  T
Q  277 ggtagttt 284  Q
    ||||||||    
T  23112217 ggtagttt 23112224  T

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