View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-16 (Length: 533)
Name: NF1484-Insertion-16
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Original strand, 35578022 - 35578547
Alignment:
| Q |
8 |
actaaattgatcaagggnnnnnnnaatatgaaaaagatcgaaaaagcgattcaggttatggagattcttgagaagcacggtgagcctgatgtttttgctt |
107 |
Q |
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| T |
35578022 |
actaaattgatcaagggtttttttaatatgaaaaagatcgaaaaagcgattcaggttatggagattcttgagaagcacggtaagcctgatgtttttgctt |
35578121 |
T |
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| Q |
108 |
acaatgcagttataagtgggttttgtaaagctgatagagttgatcatgctagtaaggtgcttgatagaatgaaaaagagaggctttgagcctgacgttgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35578122 |
acaatgcagttataagtgggttttgtaaagctgatagagttgatcatgctagtaaggtgcttgatagaatgaaaaagagaggctttgagcctgatgttgt |
35578221 |
T |
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| Q |
208 |
tacttataatattttgattggcaatttttgtggaaggggcaggcttgatttggctttaagggttatggatcagttgttgaaagataattgtaagccgacg |
307 |
Q |
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| T |
35578222 |
tacttataatattttgattggcaatttttgtggaaggggcaggcttgatttggctttaagggttatggatcagttgttgaaagataattgtaagccgacg |
35578321 |
T |
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| Q |
308 |
gctataacttatacgatattgattgaagcaaccattactcaaggtggtattgatgaggccatgaagcttctggatgagatgttgtcgagagggttgagac |
407 |
Q |
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| T |
35578322 |
gttataacttatacgatattgattgaagcaaccattactcaaggtggtattgatgaggccatgaagcttctggatgagatgttgtcgagagggttgagac |
35578421 |
T |
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| Q |
408 |
cggataggtatacatataatgttgttgtgaatggtatgtgtaaagaagggatgttggatagagcttttgagtttcttagtcggataagtaagaagggctg |
507 |
Q |
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| T |
35578422 |
cggataggtatacgtataatgttgttgtgaatggtatgtgtaaagaagggatgttggatagagcttttgagtttcttagtcggataagtaagaatggctg |
35578521 |
T |
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| Q |
508 |
tgttgctggtgtgagtacttataata |
533 |
Q |
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| T |
35578522 |
tgttgctggtgtgagtacttataata |
35578547 |
T |
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