View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-18 (Length: 556)
Name: NF1484-Insertion-18
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-18 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 24641378 - 24641750
Alignment:
| Q |
8 |
cagccggtacttaaaagcagaaaatcttacattgattttccatatataaataccattgaaacagacacagcattcgctgaagacaacagaattgcattat |
107 |
Q |
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| T |
24641378 |
cagccggtacttaaaagcagaaaatcttacattgattttccatatataaataccattgaaacagacacagcattcgctgaagacaacagaattgcattat |
24641477 |
T |
|
| Q |
108 |
atctttaggcaaagtaataaaatttaggcctgtattcctttttcaattataatgcctagatttaatttctttcggtggatcaagtacccaatgtaaggtt |
207 |
Q |
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| T |
24641478 |
atctttaggcaaagtaataaaatttaggcctgtattcctttctcaattataatgcctagatttaatttctttcggtggatcaagcacccaatgtaaggtt |
24641577 |
T |
|
| Q |
208 |
gtcagaatcaagattttgcttctttgaatcttagaacttgctctgtttggttggacaatgtcaactaaaacaaaccacataaatgttagacctgagatgc |
307 |
Q |
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| T |
24641578 |
gtcagaatcaagattttgcttctttgaatcttagaacttgctctgtttggttggacaatgtcaactaaaacaaaccacataaatgttagacctgagatgc |
24641677 |
T |
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| Q |
308 |
ttcctgtggttccgaatttggaggcggggaaacaatagcagagtttgaatgtttagaaaggaagaagaggtct |
380 |
Q |
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| T |
24641678 |
ttcctgtggttccgaatttggaggcggggaaacaacatcagagtttgaatgtttagaaaggaagaagaggtct |
24641750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 268 - 556
Target Start/End: Original strand, 24692968 - 24693255
Alignment:
| Q |
268 |
tcaactaaaacaaaccacataaatgttagacctgagatgcttcctgtggttccgaatttggaggcggggaaacaatagcagagtttgaatgtttagaaag |
367 |
Q |
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| T |
24692968 |
tcaactaaaccaaaccacatgaatgttagacctgagatgcttcctgtggttccgaatttggaggcgggggaacaacatcagagtttgaatgtttagaaag |
24693067 |
T |
|
| Q |
368 |
gaagaagaggtctttctgaattaatatattatataatttaaagaagaggtccagtgtacggcatgaaagtttatgaaccaacttgatgcagttggtgtga |
467 |
Q |
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| T |
24693068 |
gaagaagaggtctttctgaattaatatattatataatttaaagaagaggtctagtgtacggcatgaaagtttatgaaccaacttgatgcagttggtgtga |
24693167 |
T |
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| Q |
468 |
cagagaaaagtaaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctcacatc |
556 |
Q |
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| T |
24693168 |
cagacaaaagt-aaccactaaaatgaatgagttgacgatacaccaattcgagaactgagagaggataatccacaaaagtgtctcacatc |
24693255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 408 - 556
Target Start/End: Original strand, 24641739 - 24641886
Alignment:
| Q |
408 |
aagaagaggtccagtgtacggcatgaaagtttatgaaccaacttgatgcagttggtgtgacagagaaaagtaaaccactaaaatgaatgagttgacgata |
507 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24641739 |
aagaagaggtctagtgtatggcatgaaagtttatgaaccaacttgatgcagttggtgtgacagagaaaagtaa-ccactaaaatgaatgagttgacgata |
24641837 |
T |
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| Q |
508 |
caccaattcgagatctgagaaaggataatccacaaaagtgtctcacatc |
556 |
Q |
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| T |
24641838 |
caccaattcgagatctgagaaaggattatccacaaaagtgtctcacatc |
24641886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 24692587 - 24692821
Alignment:
| Q |
16 |
acttaaaagcagaaaatcttacattgattttccatatataaata--ccattgaaacagacacagcattcgctgaa-------------gacaacagaatt |
100 |
Q |
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| T |
24692587 |
acttaaaagcagaaaatcttacattgattttccatatacagataatccattgaaacagacacagcattcgctgaattaataaggaaaagacaacagagtt |
24692686 |
T |
|
| Q |
101 |
gcattatatctttaggcaaagtaataaaatttaggcctgtattcctttttcaattataatgcctagatttaatttctttcggtggatcaagtacccaatg |
200 |
Q |
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||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| || |
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| T |
24692687 |
gcattatatttttaggcaaattaataaa-tttaggcctgtattcctttt-caattttaatgcctagatttaatttatttcggtgtatcaagtaccccttg |
24692784 |
T |
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| Q |
201 |
taaggttgtcagaatcaagattttgcttctttgaatc |
237 |
Q |
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| T |
24692785 |
taaggttctcagaatcaagattttgcttctttgaatc |
24692821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 452 - 548
Target Start/End: Complemental strand, 24733509 - 24733414
Alignment:
| Q |
452 |
gatgcagttggtgtgacagagaaaagtaaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgt |
548 |
Q |
| |
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||||||||||||||| |||| ||||||| ||||||||| ||||||||||| ||||||||||||||| | |||||| |||||||||||||||||||| |
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| T |
24733509 |
gatgcagttggtgtggcagactaaagtaa-ccactaaaacgaatgagttgatgatacaccaattcgaaaactgagagaggataatccacaaaagtgt |
24733414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 453 - 548
Target Start/End: Original strand, 24648551 - 24648645
Alignment:
| Q |
453 |
atgcagttggtgtgacagagaaaagtaaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgt |
548 |
Q |
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| T |
24648551 |
atgcagttagagtgacagaataaagtaa-ccactaaaacgaatgagttgatgatacaccaattcgagaactgagagatgataatccacaaaagtgt |
24648645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 24678715 - 24678776
Alignment:
| Q |
16 |
acttaaaagcagaaaatcttacattgattttccatatataaat--accattgaaacagacac |
75 |
Q |
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| T |
24678715 |
acttaaaagcagaaaattttacattgattttccatatataaataaaccattgaaacatacac |
24678776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 556
Target Start/End: Original strand, 24720686 - 24720801
Alignment:
| Q |
443 |
aaccaacttgatgcagttggtgtgacagagaaaagtaaaccactaaaatgaatgagttgacgatacaccaattcg---agatctgagaaaggataatcca |
539 |
Q |
| |
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|||||| | ||||||||||||||| |||| ||||||| | ||| ||| |||| |||| | |||| |||||||| |||||||||||||||| ||||| |
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| T |
24720686 |
aaccaattcgatgcagttggtgtggcagactaaagtaa-cgactgaaacgaataagttaatgataaaccaattcctccagatctgagaaaggattatcca |
24720784 |
T |
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| Q |
540 |
caaaagtgtctcacatc |
556 |
Q |
| |
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|| ||| |||||||||| |
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| T |
24720785 |
cagaagcgtctcacatc |
24720801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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