View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-19 (Length: 574)
Name: NF1484-Insertion-19
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-19 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 4852131 - 4851812
Alignment:
| Q |
7 |
ataatctattaatctgacacaattaaagtgttgaatcgttttctcttttgaatgcttttcagtagagaatagagatacaccttgagcgacaagtaattgt |
106 |
Q |
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| T |
4852131 |
ataatctattaatctgacacaattaaagcgttgaatcgttttctcttttgaatgcttttcagtagagaatagagatacaccttgagcgacaagtaattgt |
4852032 |
T |
|
| Q |
107 |
-----tagatatcacttttgtatcaaaaggttgcttagataatgttggcaataaggtattataatatgatgacttgtcctttcatgcatagacattattg |
201 |
Q |
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| T |
4852031 |
actaatagatatcacttttgtatcaaaaggttgcttagataatgttggcaataaggtattagaatatgatgacttgtcctttcatgcatagacattattg |
4851932 |
T |
|
| Q |
202 |
taccctcaaacctgacatacagagttgaaaatttgcaaataagatgcaaggaagtgctaaataaaataacagattttacttattttgacttttaggttgt |
301 |
Q |
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| T |
4851931 |
taccctcaaacctgacatacagagttgaaaatttgcaaataagatgcaaggaagtgctaaataaaataacagattttacttatttttacatttaggttgt |
4851832 |
T |
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| Q |
302 |
aataatattgtgaaagtagt |
321 |
Q |
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| T |
4851831 |
aataatattgtgaaagtagt |
4851812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 305 - 574
Target Start/End: Complemental strand, 4851801 - 4851534
Alignment:
| Q |
305 |
aatattgtgaaagtagtgtttaatgacttcaatcactcgtttggttatgtggccgatcaaccaaaatcacgacaagatttcacgtcaacatagaagctta |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4851801 |
aatattgtgaaagtagtgtttaatgacttcaatcactcgtttggttatgtggccgatcaaccaaaatcacgacaagatttcacgtcaacatagaagctta |
4851702 |
T |
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| Q |
405 |
gatttgtagcttcagggttttcacgacaaatatgcattgaaacacaacacacaaattcaagatagcaccatgcatgtgtgtgcactcaaaacccttacct |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4851701 |
gatttgtagcttcagggttttcacgacaaatatgcattgaaacacaacacacaagttcaagatagcaccatgcatgtgtgtgcactcaaaacccttacct |
4851602 |
T |
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| Q |
505 |
aattgccactagtatttgagaccaatggagtaataatatcttccctcttatatgtcgagatgttgcagca |
574 |
Q |
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| T |
4851601 |
aattgccactagtatttgagaccaatggagtaataatatcttccctct--tatgtcgagatgttgcagca |
4851534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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