View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484-Insertion-21 (Length: 334)
Name: NF1484-Insertion-21
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-21 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 12065152 - 12065478
Alignment:
| Q |
8 |
tttccctgttataggatttcttgtgcaatccttcaaagatattcttcaatctagagtcaaaaagccccatcactctatgtcttaaaaaaggttaatacat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12065152 |
tttccctgttataggatttcttgtgcaatccttcaaagagattcttcaatctagagtcaaaaagccccatcactctatgtcttaaaaaaggttaatacat |
12065251 |
T |
|
| Q |
108 |
gccgaccagaaaatatatttcagcaaaagtataatgtgagtgatcattgcaactatggcaaatgaataatgtaactgctctctctttctactagcccgta |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12065252 |
gccgaccggaaaatatatttcagcaaaagtataatgtgagtgatcattgcaactatggcaaatgaataatgtaactactctctctttctactagcccgta |
12065351 |
T |
|
| Q |
208 |
aacttgatatgtataacaaccttgtgtttcatactttttcataattaaatatatatgactctctctttctcatgttataaagtttatcttttatgaaatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12065352 |
aacttgatatgtataacaaccttgtgtttcatactttttcataattaaatatatatgactctctctttctcatgttataaagtttatcttttatgaaatt |
12065451 |
T |
|
| Q |
308 |
gggttagtagcagcgctctttctctta |
334 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
12065452 |
gggttagtagcagtgctctttctctta |
12065478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 12101862 - 12101799
Alignment:
| Q |
114 |
cagaaaatatatttcagcaaaagtataatgtgagtgatcattgcaactatggcaaatgaataatgt |
179 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
12101862 |
cagaaaaaatatttcagcaaaagta--atgtgagtgatcattgacactatggcaagtgaataatgt |
12101799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University