View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484-Insertion-22 (Length: 285)

Name: NF1484-Insertion-22
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484-Insertion-22
NF1484-Insertion-22
[»] chr5 (1 HSPs)
chr5 (8-285)||(41079230-41079512)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 41079512 - 41079230
Alignment:
Q  8 tatcaatcatcattttctctcgtgttcccaattcatagtattgatagaatagaatgaacaacatacgaaacaacctacctggatgatgtcttcaaactgg 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41079512 tatcaatcatcattttctctcgtgttcccaattcatagtatttatagaatagaatgaacaacatacgaaacaacctacctggatgatgtcttcaaactgg 41079413  T
Q  108 aaccatctcgacctcattacccgt-----gcgccactgtcgccggtgagggcgaacgccaccacttgatgaagatttcgtagcacatccggattgtcaag 202  Q
    ||||||||||||||||||||||||     |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  41079412 aaccatctcgacctcattacccgtctcaggcgccactgtcgccggtgaggatgaacgccaccacttgatgaagatttcgtagcacatccgaattgtcaag 41079313  T
Q  203 tagatgaaatctataaccaaggcagtgataatggataacataaaaacctggaagattgtgcgaaagttatccgaccaagacga 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41079312 tagatgaaatctataaccaaggcagtgataatggataacataaaaacctggaagattgtgcgaaagttatccgaccaagacga 41079230  T

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