View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-23 (Length: 291)
Name: NF1484-Insertion-23
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-23 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 2 - 291
Target Start/End: Original strand, 31788525 - 31788815
Alignment:
| Q |
2 |
ccaccagaatatctgttttataggtatcaccatccatacagtttctcattcatatgaaaccaacttcaattggtccaaaaactgaaccaatctgtctgga |
101 |
Q |
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| T |
31788525 |
ccacaagagtatctgttttataggtatcaccatccatacattttctcattcatatgaaaccaacttcaattggtccaaaaactgaaccaatttctcttga |
31788624 |
T |
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| Q |
102 |
atctttagactagatactgcatacctaattca-gtcccactccaaagacatattgctggctgaattaacagaaatttatcgcggtcttagattgctaaaa |
200 |
Q |
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| T |
31788625 |
atctttagactagatactgcatacctaattcaagtcccactccgaagacatattgctggctgaattgacagcaatttatcgcggtcttagattgctaaaa |
31788724 |
T |
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| Q |
201 |
acatggttatccggattcacttctttccactaatctcatccagggggagtcatcgcattatcatgtttatgctgttcttgtgcaggacata |
291 |
Q |
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| T |
31788725 |
acatggttatccggattcacttctttccactaatctcatccatggggagtcatcgcattatcatgtttatgctgttcttgtgcaggacata |
31788815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 31794310 - 31794441
Alignment:
| Q |
2 |
ccaccagaatatctgttttataggtatcaccatccatacagtttctcattcatatgaaaccaacttcaattggtccaaaaactgaaccaatctgtctgga |
101 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
31794310 |
ccacaagagtatctgttttataggtatcaccatccatacattttctcattcatatgaaaccaacttcaattggtccaaaaactgaaccaatttctctgga |
31794409 |
T |
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| Q |
102 |
atctttagactagatactgcatacctaattca |
133 |
Q |
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| T |
31794410 |
atctttagactagatactgcatacctaattca |
31794441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 32610036 - 32609953
Alignment:
| Q |
38 |
tacagtttctcattcatatgaaaccaacttcaattggtccaaaaactgaaccaatctgtctggaatctttagactagatactgca |
122 |
Q |
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| T |
32610036 |
tacattttctcattgatatgaaaccaacttcaattggtccaaaa-ctgaaccaatttgtctggaatctttagactagatactgca |
32609953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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