View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484-Insertion-24 (Length: 255)

Name: NF1484-Insertion-24
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484-Insertion-24
NF1484-Insertion-24
[»] chr1 (14 HSPs)
chr1 (8-255)||(9452251-9452498)
chr1 (8-69)||(13166239-13166300)
chr1 (8-69)||(20200342-20200403)
chr1 (8-69)||(20840517-20840578)
chr1 (8-58)||(13150137-13150187)
chr1 (13-69)||(22891096-22891152)
chr1 (24-69)||(4246901-4246946)
chr1 (22-67)||(1626431-1626476)
chr1 (30-68)||(23477191-23477229)
chr1 (30-69)||(15803468-15803507)
chr1 (30-69)||(17838233-17838272)
chr1 (28-67)||(41330638-41330677)
chr1 (28-69)||(10339413-10339454)
chr1 (25-69)||(24986845-24986889)
[»] chr8 (8 HSPs)
chr8 (127-235)||(26706593-26706701)
chr8 (132-236)||(40736535-40736639)
chr8 (8-69)||(22485978-22486039)
chr8 (11-69)||(22476922-22476980)
chr8 (8-68)||(23540661-23540721)
chr8 (30-69)||(9997590-9997629)
chr8 (22-69)||(18622516-18622563)
chr8 (8-66)||(27924708-27924767)
[»] chr3 (18 HSPs)
chr3 (127-235)||(47158701-47158809)
chr3 (8-69)||(17135398-17135459)
chr3 (8-69)||(23953811-23953872)
chr3 (8-74)||(24196370-24196436)
chr3 (8-69)||(7028324-7028385)
chr3 (8-69)||(15572259-15572320)
chr3 (8-75)||(13514865-13514932)
chr3 (8-69)||(18482626-18482687)
chr3 (8-67)||(13791522-13791581)
chr3 (8-69)||(1918497-1918558)
chr3 (22-69)||(296255-296302)
chr3 (22-69)||(3551734-3551781)
chr3 (22-69)||(28052193-28052240)
chr3 (23-69)||(44453136-44453183)
chr3 (22-65)||(6578579-6578622)
chr3 (22-69)||(21547642-21547689)
chr3 (29-69)||(979635-979675)
chr3 (10-69)||(20626895-20626955)
[»] chr7 (17 HSPs)
chr7 (137-238)||(34249637-34249738)
chr7 (8-69)||(15507075-15507136)
chr7 (8-69)||(20992388-20992450)
chr7 (8-69)||(11520664-11520725)
chr7 (9-69)||(12326658-12326718)
chr7 (8-69)||(4459584-4459646)
chr7 (8-69)||(645977-646038)
chr7 (11-69)||(14166008-14166066)
chr7 (8-69)||(16221826-16221887)
chr7 (26-65)||(3801868-3801907)
chr7 (22-69)||(10661959-10662006)
chr7 (28-69)||(10280708-10280749)
chr7 (28-69)||(23082030-23082071)
chr7 (8-69)||(15438921-15438986)
chr7 (22-69)||(10037984-10038031)
chr7 (24-69)||(11999536-11999582)
chr7 (8-52)||(16207151-16207195)
[»] chr6 (31 HSPs)
chr6 (132-236)||(6180401-6180505)
chr6 (8-69)||(13196169-13196230)
chr6 (10-69)||(17235441-17235500)
chr6 (8-69)||(8464920-8464981)
chr6 (8-69)||(9280963-9281024)
chr6 (8-69)||(11992274-11992335)
chr6 (8-69)||(19168291-19168352)
chr6 (8-69)||(21722661-21722722)
chr6 (10-69)||(17856042-17856101)
chr6 (8-66)||(17525592-17525650)
chr6 (8-66)||(19893924-19893982)
chr6 (8-69)||(33666636-33666695)
chr6 (8-69)||(25970522-25970583)
chr6 (8-69)||(25974962-25975023)
chr6 (9-69)||(20989043-20989103)
chr6 (8-66)||(21705786-21705844)
chr6 (28-74)||(26964803-26964849)
chr6 (8-69)||(23879730-23879791)
chr6 (22-58)||(17863738-17863774)
chr6 (9-69)||(19077985-19078045)
chr6 (10-54)||(19100722-19100766)
chr6 (22-69)||(12385112-12385159)
chr6 (22-69)||(23880944-23880991)
chr6 (22-67)||(19598529-19598574)
chr6 (22-69)||(3566104-3566151)
chr6 (26-69)||(20653933-20653976)
chr6 (23-69)||(34991158-34991205)
chr6 (8-56)||(13869670-13869716)
chr6 (24-69)||(21316893-21316938)
chr6 (25-69)||(20465165-20465209)
chr6 (22-66)||(24542695-24542739)
[»] chr4 (17 HSPs)
chr4 (132-236)||(7585516-7585620)
chr4 (8-76)||(18600906-18600974)
chr4 (8-74)||(23399444-23399510)
chr4 (8-69)||(16384735-16384796)
chr4 (8-74)||(25117701-25117767)
chr4 (22-69)||(10725056-10725103)
chr4 (22-69)||(10938825-10938872)
chr4 (22-67)||(15699592-15699637)
chr4 (10-78)||(28020150-28020218)
chr4 (22-69)||(15161756-15161803)
chr4 (22-67)||(10683284-10683329)
chr4 (22-67)||(10896924-10896969)
chr4 (22-69)||(10718511-10718558)
chr4 (22-69)||(10932280-10932327)
chr4 (26-69)||(19182936-19182979)
chr4 (30-69)||(33744532-33744571)
chr4 (28-65)||(41786287-41786324)
[»] chr5 (13 HSPs)
chr5 (8-69)||(22251294-22251355)
chr5 (8-69)||(22240231-22240292)
chr5 (8-69)||(22404014-22404075)
chr5 (9-69)||(24190709-24190769)
chr5 (22-69)||(23624699-23624746)
chr5 (22-69)||(23419810-23419857)
chr5 (22-69)||(26037636-26037683)
chr5 (22-67)||(20713999-20714044)
chr5 (8-69)||(23757510-23757571)
chr5 (8-69)||(23822966-23823027)
chr5 (9-76)||(9420600-9420668)
chr5 (22-69)||(13941269-13941316)
chr5 (22-69)||(22081945-22081992)
[»] scaffold0359 (1 HSPs)
scaffold0359 (8-69)||(2734-2795)
[»] scaffold0103 (1 HSPs)
scaffold0103 (8-69)||(24931-24992)
[»] scaffold0059 (1 HSPs)
scaffold0059 (8-74)||(47639-47705)
[»] scaffold0024 (1 HSPs)
scaffold0024 (8-66)||(159916-159974)
[»] scaffold0453 (1 HSPs)
scaffold0453 (8-69)||(1254-1315)
[»] scaffold0129 (1 HSPs)
scaffold0129 (8-69)||(16350-16411)
[»] scaffold0037 (1 HSPs)
scaffold0037 (8-69)||(109512-109573)
[»] chr2 (6 HSPs)
chr2 (8-69)||(12911337-12911398)
chr2 (8-69)||(22614385-22614446)
chr2 (8-69)||(23759469-23759530)
chr2 (8-69)||(24789412-24789473)
chr2 (165-233)||(32267368-32267436)
chr2 (30-69)||(15329186-15329225)
[»] scaffold0185 (1 HSPs)
scaffold0185 (8-69)||(1621-1682)
[»] scaffold0069 (1 HSPs)
scaffold0069 (8-53)||(9519-9564)
[»] scaffold0006 (1 HSPs)
scaffold0006 (8-53)||(88589-88634)
[»] scaffold0226 (3 HSPs)
scaffold0226 (22-69)||(17378-17425)
scaffold0226 (22-69)||(26772-26819)
scaffold0226 (22-69)||(6792-6839)
[»] scaffold0213 (1 HSPs)
scaffold0213 (26-69)||(7832-7875)
[»] scaffold0008 (1 HSPs)
scaffold0008 (22-69)||(36599-36646)
[»] scaffold0190 (1 HSPs)
scaffold0190 (8-70)||(15874-15936)
[»] scaffold0035 (1 HSPs)
scaffold0035 (30-69)||(38171-38210)
[»] scaffold0259 (1 HSPs)
scaffold0259 (29-70)||(16578-16619)
[»] scaffold0088 (1 HSPs)
scaffold0088 (25-69)||(37450-37494)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 9452251 - 9452498
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacccaccactttttaaatcgaacattttccaaccataactaca 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9452251 ggttccaacttacagaacaaggatatttgttttagcaacaatgcagccaatccaaatacccaccactttttaaatcgaacattttccaaccataactaca 9452350  T
Q  108 aaatcagaattaaactagtttggtgcttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9452351 aaatcagaattaaactagtttggtgcttctaatgatgttgatctgttaattcactcccaccctccagaggggttcattcctttgctgcaatcggatgaat 9452450  T
Q  208 tgggaacgctctttttgaggcgttagtttctgttcttttctttttgtt 255  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9452451 taggaacgctctttttgaggcgttagtttctgttcttttctttttgtt 9452498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 13166239 - 13166300
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  13166239 ggttccaacttacagaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 13166300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 20200403 - 20200342
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  20200403 ggttccaacttatacaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 20200342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 20840578 - 20840517
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  20840578 ggttccaacttacacatcaaggatatttgttttagcaacaatgcagccaatacaaataccca 20840517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 13150137 - 13150187
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaat 58  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13150137 ggttccaacttacagaacaaggatatttgttttagcaacaatgcagccaat 13150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 22891152 - 22891096
Alignment:
Q  13 caacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  22891152 caacttacacaacaaggatatttattttagcaacaatgcagccaatacaaataccca 22891096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 4246901 - 4246946
Alignment:
Q  24 acaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  4246901 acaaggatatttgttttagcaacaatgcagccaatacaaataccca 4246946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 1626431 - 1626476
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaatacc 67  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||    
T  1626431 aaacaaggatatttgttttagcaataatgcagccaatacaaatacc 1626476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 23477229 - 23477191
Alignment:
Q  30 atatttgttttagcaacaatgcagccaatccaaataccc 68  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  23477229 atatttgttttagcaacaatgcagccaatacaaataccc 23477191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 15803507 - 15803468
Alignment:
Q  30 atatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  15803507 atatttgttttagcaataatgcagccaatgcaaataccca 15803468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 17838272 - 17838233
Alignment:
Q  30 atatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  17838272 atatttgttttagcaataatgcagccaatacaaataccca 17838233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 41330677 - 41330638
Alignment:
Q  28 ggatatttgttttagcaacaatgcagccaatccaaatacc 67  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  41330677 ggatatttgttttagcaacaatgcagtcaatacaaatacc 41330638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 10339454 - 10339413
Alignment:
Q  28 ggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||| ||||||||| |||||||||||| ||||||||||    
T  10339454 ggatatttattttagcaataatgcagccaatacaaataccca 10339413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 24986845 - 24986889
Alignment:
Q  25 caaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||||||    
T  24986845 caaggatatttattttagcaataatgcagtcaatacaaataccca 24986889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 26706701 - 26706593
Alignment:
Q  127 ttggtgcttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgctctttttgag 226  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  26706701 ttggtgcttctaatgatgttgaactgttaattcacgcccaccctccagaggagctccttcctttgctgcagtcggatgaattaggaacgctctttttgag 26706602  T
Q  227 gcgttagtt 235  Q
    |||||||||    
T  26706601 gcgttagtt 26706593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 40736639 - 40736535
Alignment:
Q  132 gcttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgctctttttgaggcgtt 231  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||    
T  40736639 gcttctaatgatgttgatttgttaattcactcccaccctccagatgggctccttcctttgctgcagtcggatgaattaggaacgatctttttgaggcgtt 40736540  T
Q  232 agttt 236  Q
    |||||    
T  40736539 agttt 40736535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 22485978 - 22486039
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  22485978 ggttccaacttacagaacaaggatatttattttagcaacaatacagccaatacaaataccca 22486039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 22476922 - 22476980
Alignment:
Q  11 tccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  22476922 tccaacttacagaacaaagatatttgttttagcaacaatgcaaccaatacaaataccca 22476980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 23540721 - 23540661
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccc 68  Q
    |||||||||||||| | |||||||||||||||| |||| |||||||||||| |||||||||    
T  23540721 ggttccaacttacacatcaaggatatttgttttcgcaataatgcagccaatacaaataccc 23540661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 9997590 - 9997629
Alignment:
Q  30 atatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  9997590 atatttgttttagcaataatgcagccaatacaaataccca 9997629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 18622516 - 18622563
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||| |||||||||||||||| |||||| ||||| ||||||||||    
T  18622516 aaacaagaatatttgttttagcaataatgcaaccaatacaaataccca 18622563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 27924767 - 27924708
Alignment:
Q  8 ggttccaacttacaaaa-caaggatatttgttttagcaacaatgcagccaatccaaatac 66  Q
    |||||||||||||| || ||||||||||||||| ||||| |||||||||| | |||||||    
T  27924767 ggttccaacttacacaatcaaggatatttgtttcagcaataatgcagccactacaaatac 27924708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 47158809 - 47158701
Alignment:
Q  127 ttggtgcttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgctctttttgag 226  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||||| || ||| | ||||||||||| ||||||||||| |||||||||||||||||    
T  47158809 ttggagcttctaacgatgttgatttgttaattcactcccaccctccagacggactcctccctttgctgcagtcggatgaattaggaacgctctttttgag 47158710  T
Q  227 gcgttagtt 235  Q
    |||||||||    
T  47158709 gcgttagtt 47158701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 17135459 - 17135398
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  17135459 ggttccaacttacagaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 17135398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 23953872 - 23953811
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  23953872 ggttccaacttacagaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 23953811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 24196370 - 24196436
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacccaccact 74  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  24196370 ggttccaacttagaaaacaaggatatttgtttttgcaacaatgcagccaatacaaatacccaacact 24196436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 7028385 - 7028324
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  7028385 ggttccaacttacagaacaaagatatttgttttagcaacaatgcagccaatacaaataccca 7028324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 15572320 - 15572259
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  15572320 ggttccaacttacagatcaaggatatttgttttagcaacaatgcagccaatacaaataccca 15572259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 13514932 - 13514865
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacccaccactt 75  Q
    |||||||||||||| | | |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  13514932 ggttccaacttacacatcgaggatatttgttttagcaacaatgcagccaatacaaatacccaacactt 13514865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 18482687 - 18482626
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  18482687 ggttccaacttacagaacaatgatatttgttttagcaataatgcagccaatacaaataccca 18482626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 13791522 - 13791581
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacc 67  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  13791522 ggtttcaacttacagaacaaggatatttgttttagcaacaatgcagccaataaaaatacc 13791581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 1918558 - 1918497
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| ||||||||||||||||||| |||||||||| | ||| ||||||||||    
T  1918558 ggttccaacttacagaacaaggatatttgttttaccaacaatgcaacaaatacaaataccca 1918497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 296255 - 296302
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  296255 aaacaaggatatttgttttagcaacaatgcaaccaatacaaataccca 296302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 3551781 - 3551734
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||    
T  3551781 aaacatggatatttgttttagcaataatgcagccaatacaaataccca 3551734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 28052193 - 28052240
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  28052193 aaacaaggatatttgttttaacaataatgcagccaatacaaataccca 28052240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 44453136 - 44453183
Alignment:
Q  23 aacaaggatatttgtttt-agcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||    
T  44453136 aacaaggatatttgtttttagcaacaatgcagccaatacaaataccca 44453183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 6578622 - 6578579
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaata 65  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||    
T  6578622 aaacatggatatttgttttagcaataatgcagccaatacaaata 6578579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 21547642 - 21547689
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||| |||||| ||||||||| |||||||||||| ||||||||||    
T  21547642 aaacaagaatatttattttagcaataatgcagccaatacaaataccca 21547689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 979675 - 979635
Alignment:
Q  29 gatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||||| |||| ||||||| ||||||||||    
T  979675 gatatttgttttagcaataatgtagccaatacaaataccca 979635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 20626955 - 20626895
Alignment:
Q  10 ttccaacttacaaa-acaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||| | |||||||||||||||||||||| ||  || ||||| ||||||||||    
T  20626955 ttccaacttacacatacaaggatatttgttttagcaataacacatccaatacaaataccca 20626895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 34249637 - 34249738
Alignment:
Q  137 taatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgctctttttgaggcgttagttt 236  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| | |||||  |||||||||| ||||| |||    
T  34249637 taatgatgttgatttgttaattcactcccaccctccagacgggctccttcctttgctgcagtcggatgaactaggaacattctttttgagacgttaattt 34249736  T
Q  237 ct 238  Q
    ||    
T  34249737 ct 34249738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 15507075 - 15507136
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  15507075 ggttccaacttacacatcaaggatatttgttttagcaacaatgcagccaatacaaataccca 15507136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 20992388 - 20992450
Alignment:
Q  8 ggttccaacttaca-aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  20992388 ggttccaacttacataaacaaggatatttgttttagcaataatgcagccaatacaaataccca 20992450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 11520725 - 11520664
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  11520725 ggttccaaattacagaacaaagatatttgttttagcaacaatgcagccaatacaaataccca 11520664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 12326658 - 12326718
Alignment:
Q  9 gttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||    
T  12326658 gttccaacttacacaccaaggatatttgttttagcaataatgcagccaatacaaataccca 12326718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 4459584 - 4459646
Alignment:
Q  8 ggttccaacttaca-aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||||||    
T  4459584 ggttccaacttacagaaacaaggatatttgttttagcaacaatacagccaacacaaataccca 4459646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 645977 - 646038
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| |||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  645977 ggttctaacttagagaacaaggatatttgttttagcaacaatgcaaccaatacaaataccca 646038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 14166008 - 14166066
Alignment:
Q  11 tccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||| ||||||||||||| ||||||||| |||| ||||||| ||||||||||    
T  14166008 tccaacttacagaacaaggatattttttttagcaataatgtagccaatacaaataccca 14166066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 16221887 - 16221826
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |  || ||||||| |||||||||||||||||||||| ||||||||||    
T  16221887 ggttccaacttacataggaaagatatttattttagcaacaatgcagccaatacaaataccca 16221826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 3801868 - 3801907
Alignment:
Q  26 aaggatatttgttttagcaacaatgcagccaatccaaata 65  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  3801868 aaggatatttgttttagcaacaatgcagccaatacaaata 3801907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 10661959 - 10662006
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||    
T  10661959 aaacatggatatttgttttagcaataatgcagccaatacaaataccca 10662006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 10280708 - 10280749
Alignment:
Q  28 ggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  10280708 ggatatttattttagcaacaatgcagccaatacaaataccca 10280749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 23082071 - 23082030
Alignment:
Q  28 ggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  23082071 ggatatttgttttagcaataatgcagccaatacaaataccca 23082030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 15438921 - 15438986
Alignment:
Q  8 ggttccaacttacaaaacaaggatat----ttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| | |||||||||    ||||||||||||||||||| ||||| ||||||||||    
T  15438921 ggttccaacttacacatcaaggatatatatttgttttagcaacaatgcaaccaatacaaataccca 15438986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 10038031 - 10037984
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| ||||||||||||| |||| |||||||||||| ||||||||||    
T  10038031 aaacatggatatttgttttcgcaataatgcagccaatacaaataccca 10037984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 11999536 - 11999582
Alignment:
Q  24 acaaggatatttgtttt-agcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  11999536 acaaggatatttgtttttagcaacaatgcagctaatacaaataccca 11999582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 16207195 - 16207151
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgca 52  Q
    |||| ||||||||| ||||| |||||||| |||||||||||||||    
T  16207195 ggtttcaacttacacaacaaagatatttggtttagcaacaatgca 16207151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 6180401 - 6180505
Alignment:
Q  132 gcttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgctctttttgaggcgtt 231  Q
    |||||||| || |||||| |||||||||||| |||||||||||| || ||| | ||||||||||| || |||||||| ||||||||||||||||||||||    
T  6180401 gcttctaacgaagttgatttgttaattcactaccaccctccagacggactcctccctttgctgcagtcagatgaattaggaacgctctttttgaggcgtt 6180500  T
Q  232 agttt 236  Q
    |||||    
T  6180501 agttt 6180505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 13196169 - 13196230
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  13196169 ggttccaacttacaaaacaaggatatttgttttagcaataatgcagccaatacaaataccca 13196230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 17235441 - 17235500
Alignment:
Q  10 ttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||    
T  17235441 ttccaacttacaaaacaaagatatttgttttagcaacaatgcagtcaatacaaataccca 17235500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 8464981 - 8464920
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  8464981 ggttccaacttacacaacaaggatatttattttagcaataatgcagccaatacaaataccca 8464920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 9281024 - 9280963
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||    
T  9281024 ggttccaacttacaaaacaagaatatttgttttagcaacaatgtagccgatacaaataccca 9280963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 11992335 - 11992274
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||  ||||||||||    
T  11992335 ggttccaacttacagaacaaggatatttgttttagcaataatgcagccaacacaaataccca 11992274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 19168291 - 19168352
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| | ||||||||||| |||||||||||||||||||||| ||||||||||    
T  19168291 ggttccaacttacacatcaaggatatttattttagcaacaatgcagccaatacaaataccca 19168352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 21722722 - 21722661
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  21722722 ggttccaacttacagaacaaggatatttgttttagcaataatgcagctaatacaaataccca 21722661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 17856042 - 17856101
Alignment:
Q  10 ttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||| | |||||||||||||||||||||||||||| ||||| ||||||||||    
T  17856042 ttccaacttacagatcaaggatatttgttttagcaacaatgcatccaatacaaataccca 17856101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 17525650 - 17525592
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatac 66  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||||||| |||||||    
T  17525650 ggttccaacttaaagaacaaggatatttgttttagcaacaaagcagccaatacaaatac 17525592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 19893982 - 19893924
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatac 66  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||    
T  19893982 ggttccaacttacagaacaaggatatttgttttagcagcaacgcagccaatacaaatac 19893924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 33666636 - 33666695
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||    
T  33666636 ggttccaacttacat--caaggatatttgttttagcaacaatgcagccaatacaaataccca 33666695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 25970522 - 25970583
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||| | ||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  25970522 ggttccaacttatagaacaaagatatttgttttagcaacaatgcagcaaatacaaataccca 25970583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 25974962 - 25975023
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||| | ||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  25974962 ggttccaacttatagaacaaagatatttgttttagcaacaatgcagcaaatacaaataccca 25975023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 20989103 - 20989043
Alignment:
Q  9 gttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||| | |||| ||||||||||||||||||||||| ||||| ||||||||||    
T  20989103 gttccaacttacacagcaagaatatttgttttagcaacaatgcatccaatacaaataccca 20989043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 21705844 - 21705786
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatac 66  Q
    |||||||||||| | ||||||||||||||||||||||| |||||| ||||| |||||||    
T  21705844 ggttccaacttagagaacaaggatatttgttttagcaataatgcatccaatacaaatac 21705786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 26964849 - 26964803
Alignment:
Q  28 ggatatttgttttagcaacaatgcagccaatccaaatacccaccact 74  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  26964849 ggatatttgttttagcaacaatgcagccaatacaaatacccaacact 26964803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 23879730 - 23879791
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||| | | |||||||||||||||||||||||||||||| |||  |||||||||    
T  23879730 ggttccaacttatagatcaaggatatttgttttagcaacaatgcagctaatagaaataccca 23879791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 17863774 - 17863738
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaat 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  17863774 aaacaaggatatttgttttagcaacaatgcagccaat 17863738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 19077985 - 19078045
Alignment:
Q  9 gttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||| | |||| ||||||||||||| |||||| |||||||| ||||||||||    
T  19077985 gttccaacttacacatcaagaatatttgttttagaaacaattcagccaatacaaataccca 19078045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 19100722 - 19100766
Alignment:
Q  10 ttccaacttacaaaacaaggatatttgttttagcaacaatgcagc 54  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  19100722 ttccaacttatagaacaaggatatttgttttagcaacaatgcagc 19100766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 12385159 - 12385112
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||||||    
T  12385159 aaacaatgatatttgttttagcaataatgcagccaatacaaataccca 12385112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 23880991 - 23880944
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||    
T  23880991 aaacatggatatttgttttagcaataatgcagccaatacaaataccca 23880944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 19598529 - 19598574
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaatacc 67  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||    
T  19598529 aaacatggatatttgttttagcaataatgcagccaattcaaatacc 19598574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 3566151 - 3566104
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| |||||||||| ||||||| |||||||||||| ||||||||||    
T  3566151 aaacatggatatttgtattagcaataatgcagccaatacaaataccca 3566104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 20653933 - 20653976
Alignment:
Q  26 aaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  20653933 aaggatatttgttttagcaataatgcagacaatacaaataccca 20653976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 34991205 - 34991158
Alignment:
Q  23 aacaaggatatttgtttt-agcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||||||    
T  34991205 aacaaggatatttgtttttagcaacaatgcagtcaatacaaataccca 34991158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 13869716 - 13869670
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagcca 56  Q
    ||||||||||||||   |||||||||||||||||||||||||| |||||    
T  13869716 ggttccaacttacat--caaggatatttgttttagcaacaatgtagcca 13869670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 21316938 - 21316893
Alignment:
Q  24 acaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| |||||||||||||||| |||| ||||||| ||||||||||    
T  21316938 acaagaatatttgttttagcaataatgaagccaatacaaataccca 21316893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 20465209 - 20465165
Alignment:
Q  25 caaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||| |||| ||||||| |||| ||||||||||    
T  20465209 caaggatatttgtttttgcaataatgcagacaatacaaataccca 20465165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 24542695 - 24542739
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaatac 66  Q
    ||||| |||||||||||||||||| ||||||| |||| |||||||    
T  24542695 aaacatggatatttgttttagcaataatgcagtcaatacaaatac 24542739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 7585620 - 7585516
Alignment:
Q  132 gcttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgctctttttgaggcgtt 231  Q
    ||||| |||||||||||| || |||||||||||||||||||||| ||||||   |||||| |||| ||||||||||| |||||||||||||||||| |||    
T  7585620 gcttccaatgatgttgatttgctaattcactcccaccctccagacgggctctaccctttgttgcagtcggatgaattaggaacgctctttttgaggtgtt 7585521  T
Q  232 agttt 236  Q
    |||||    
T  7585520 agttt 7585516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 18600974 - 18600906
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacccaccacttt 76  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  18600974 ggttccaacttacagaacaaggatatttgttttagcaacaatacagccaatacaaatacccaacacttt 18600906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 23399510 - 23399444
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacccaccact 74  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  23399510 ggttccaacttacagaacaaggatatttattttagcaacaatgcagccaatacaaatacccaacact 23399444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 16384735 - 16384796
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  16384735 ggtttcaacttacacaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 16384796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 25117701 - 25117767
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacccaccact 74  Q
    |||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  25117701 ggttccaacttacagatcaaggatatttgttgtagcaacaatgcagccaatacaaatacccaacact 25117767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 10725056 - 10725103
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  10725056 aaacaaggatatttgttttagcaataatgcagccaatacaaataccca 10725103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 10938825 - 10938872
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  10938825 aaacaaggatatttgttttagcaataatgcagccaatacaaataccca 10938872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 15699637 - 15699592
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaatacc 67  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  15699637 aaacaaggatatttgttttagtaacaatgcagccaatacaaatacc 15699592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 28020150 - 28020218
Alignment:
Q  10 ttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacccaccacttttt 78  Q
    |||||||||||| | ||||| ||||| ||||||||||||||||| |||| |||||||||| ||| ||||    
T  28020150 ttccaacttacagatcaaggttatttattttagcaacaatgcagtcaatacaaatacccaacacatttt 28020218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 15161803 - 15161756
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  15161803 aaacaaggatatttgttttaacaataatgcagccaatacaaataccca 15161756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 10683284 - 10683329
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaatacc 67  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||    
T  10683284 aaacatggatatttgttttagcaataatgcagccaatacaaatacc 10683329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 10896924 - 10896969
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaatacc 67  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||    
T  10896924 aaacatggatatttgttttagcaataatgcagccaatacaaatacc 10896969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 10718511 - 10718558
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| ||||||||| |||||||| |||||||||||| ||||||||||    
T  10718511 aaacatggatatttgctttagcaataatgcagccaatacaaataccca 10718558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 10932280 - 10932327
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| ||||||||| |||||||| |||||||||||| ||||||||||    
T  10932280 aaacatggatatttgctttagcaataatgcagccaatacaaataccca 10932327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 19182979 - 19182936
Alignment:
Q  26 aaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||    
T  19182979 aaggatatttgttttagcaataatgtagccaatacaaataccca 19182936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 33744532 - 33744571
Alignment:
Q  30 atatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  33744532 atatttgttttagcaataatgcagccaatacaaataccca 33744571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 41786287 - 41786324
Alignment:
Q  28 ggatatttgttttagcaacaatgcagccaatccaaata 65  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  41786287 ggatatttgttttagcaataatgcagccaatacaaata 41786324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 22251355 - 22251294
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22251355 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 22251294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 22240292 - 22240231
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  22240292 ggttccaacttacagaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 22240231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 22404075 - 22404014
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  22404075 ggttccaacttacagaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 22404014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 24190709 - 24190769
Alignment:
Q  9 gttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  24190709 gttccaacttacagaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 24190769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 23624699 - 23624746
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  23624699 aaacaaggatatttgttttagcaataatgcagccaatacaaataccca 23624746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 23419857 - 23419810
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  23419857 aaacaagaatatttgttttaacaacaatgcagccaatacaaataccca 23419810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 26037636 - 26037683
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  26037636 aaacaagaatatttgttttagcaataatgcagccaatacaaataccca 26037683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 20714044 - 20713999
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaatacc 67  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||    
T  20714044 aaacatggatatttgttttagcaataatgcagccaatacaaatacc 20713999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 23757571 - 23757510
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||| ||| |  ||||||||||||||||||||||||||| ||| | ||||||||||    
T  23757571 ggttccaactaacacataaaggatatttgttttagcaacaatgcacccagtacaaataccca 23757510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 23823027 - 23822966
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||| ||| |  ||||||||||||||||||||||||||| ||| | ||||||||||    
T  23823027 ggttccaactaacacataaaggatatttgttttagcaacaatgcacccagtacaaataccca 23822966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 9420668 - 9420600
Alignment:
Q  9 gttccaacttacaaaacaaggatatttg-ttttagcaacaatgcagccaatccaaatacccaccacttt 76  Q
    |||||||||||||  ||||||||||||| ||||||||| ||||||| |||| ||||||| || ||||||    
T  9420668 gttccaacttacaggacaaggatatttgtttttagcaaaaatgcagtcaatgcaaatactcaacacttt 9420600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 13941316 - 13941269
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| |||||||||||||||||| |||||||||||| |||| |||||    
T  13941316 aaacatggatatttgttttagcaataatgcagccaatacaaaaaccca 13941269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 22081992 - 22081945
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| |||||||||||||| ||||||| |||||||| ||||||||||    
T  22081992 aaacatggatatttgttttaacaacaatacagccaatacaaataccca 22081945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 2734 - 2795
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2734 ggtttcaacttacaaaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 2795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 24992 - 24931
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  24992 ggttccaacttacagaacaaggatatttgttttagcaacaatgcagccaatacaaataccca 24931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 47705 - 47639
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacccaccact 74  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  47705 ggttctaacttacagaacaaggatatttgttttagcaacaatgcagccaatacaaattcccaacact 47639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 159916 - 159974
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatac 66  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  159916 ggtttcaacttacagaacaaggatatttgttttagcaacaatgcagccaatacaaatac 159974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 1315 - 1254
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||    
T  1315 ggttccaacttacaaaacaaggatatttattttagcaacaatacaaccaatacaaataccca 1254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 16350 - 16411
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||    
T  16350 ggttccaacttacagaacaaggatatttgttttagcaacaatgcaaccattacaaataccca 16411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 109573 - 109512
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||||||||    
T  109573 ggttccaacttacagaacagggatatttgttttagcaacaatacagccaatacaaataccca 109512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 12911337 - 12911398
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||||| ||||||||||    
T  12911337 ggttccaacttacaggacaatgatatttgttttagcaacaatgcagccaatacaaataccca 12911398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 22614385 - 22614446
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  22614385 ggtttcaacttacagaacaaggatatttattttagcaacaatgcagccaatacaaataccca 22614446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 23759469 - 23759530
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| || ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23759469 ggttctaagttacagaacaagaatatttgttttagcaacaatgcagccaatacaaataccca 23759530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 24789473 - 24789412
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||| ||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  24789473 ggttccaaattacagaacaaggatatttattttagcaacaatacagccaatacaaataccca 24789412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 32267436 - 32267368
Alignment:
Q  165 caccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgctctttttgaggcgttag 233  Q
    |||| ||||||||| ||  |||||||||||||||||||||||||  ||||||| || || |||||||||    
T  32267436 caccatccagagggccttcttcctttgctgcaatcggatgaattatgaacgcttttcttaaggcgttag 32267368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 15329186 - 15329225
Alignment:
Q  30 atatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  15329186 atatttgttttagcaacaatgtagccaatacaaataccca 15329225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 1682 - 1621
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||| ||||||||| |||| |||||||||||||||||| |||||||||||| ||||||||||    
T  1682 ggtttcaacttacagaacagggatatttgttttagcaataatgcagccaatacaaataccca 1621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 9519 - 9564
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcag 53  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||    
T  9519 ggtttcaacttacaaaacaaggatatttgttttagcaataatgcag 9564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 88589 - 88634
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcag 53  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||    
T  88589 ggttccaacttacagaacaaggatatttgttttagcaataatgcag 88634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 17425 - 17378
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  17425 aaacaaggatatttgttttagcaataatgcagtcaatacaaataccca 17378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 26819 - 26772
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  26819 aaacaaggatatttgttttagcaataatgcagtcaatacaaataccca 26772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 6839 - 6792
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||||||| |||||||| |||| ||||||| ||||||||||    
T  6839 aaacaaggatatttgctttagcaataatgtagccaatacaaataccca 6792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 7875 - 7832
Alignment:
Q  26 aaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  7875 aaggatatttgttttagcaataatgcagccaatacaaataccca 7832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 36599 - 36646
Alignment:
Q  22 aaacaaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||    
T  36599 aaacatggatatttgttttagcaataatgcagccaatacaaataccca 36646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 15936 - 15874
Alignment:
Q  8 ggttccaacttacaaaacaaggatatttgttttagcaacaatgcagccaatccaaatacccac 70  Q
    |||||||||||||| ||||||||||||| |||||  || ||||||| |||| |||||||||||    
T  15936 ggttccaacttacacaacaaggatatttattttaataataatgcagtcaatacaaatacccac 15874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 38171 - 38210
Alignment:
Q  30 atatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  38171 atatttgttttagcaataatgcagccaatacaaataccca 38210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 16619 - 16578
Alignment:
Q  29 gatatttgttttagcaacaatgcagccaatccaaatacccac 70  Q
    |||||||||||||||||||||  ||||||| |||||||||||    
T  16619 gatatttgttttagcaacaatttagccaatacaaatacccac 16578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 37450 - 37494
Alignment:
Q  25 caaggatatttgttttagcaacaatgcagccaatccaaataccca 69  Q
    ||||||||||| || |||||| |||||||||||| ||||||||||    
T  37450 caaggatattttttgtagcaataatgcagccaatacaaataccca 37494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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