View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484-Insertion-27 (Length: 275)
Name: NF1484-Insertion-27
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-27 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 53325332 - 53325599
Alignment:
| Q |
8 |
catacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53325332 |
catacatctagcataactcttgtaatatttggtaatttcttcttcagaattaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgct |
53325431 |
T |
|
| Q |
108 |
tctaaattttcatcactattttcatttatgcgatcaacctcctcttggacagaagaagtagatcccgtctccact-aatgcagaaaattttacaaaacac |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
53325432 |
tctaaatttttatcactattttcatttatgtgatcaacctcctcttggacagaagaagtagatcccgtctccactaaatacagaaaattttacaaaacac |
53325531 |
T |
|
| Q |
207 |
aaacttaaattaatcaactaaaattcacaagtagatataacatgatttctatatatctaactatataaa |
275 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53325532 |
aaacttaaattaatcaact-aaattaacaagtggatataacatgatttctatatatctaactagataaa |
53325599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 14122526 - 14122260
Alignment:
| Q |
8 |
catacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgct |
107 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14122526 |
catacatctagcatagctcttataatatttggtaacttcttcttcagaattaaatgtcatcccaatcctagattcttcatctgcttgaacaatatttgct |
14122427 |
T |
|
| Q |
108 |
tctaaattttcatcactattttcatttatgcgatcaacctcctcttggacagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14122426 |
tctaaattttcatcactattttcatttaggtgatcaacctcctcttggacagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacaca |
14122327 |
T |
|
| Q |
208 |
aacttaaattaatcaactaaaattcacaagtagatataacatgatttctatatatctaactatataaa |
275 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14122326 |
aacttaaactaatcaact-aaattaacaagtggatataacatgatttctatatatctaactaaataaa |
14122260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 40248601 - 40248556
Alignment:
| Q |
44 |
ttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
89 |
Q |
| |
|
|||||||||| | ||||||||||||||| | ||||||||||||||| |
|
|
| T |
40248601 |
ttcttcttcagacctaaatgtcatcccagttctaggttcttcatct |
40248556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 41698479 - 41698399
Alignment:
| Q |
9 |
atacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
89 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||||| | || ||||| |||| |||| | ||||||| |||||| |
|
|
| T |
41698479 |
atacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggttcatcatct |
41698399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 41704073 - 41703993
Alignment:
| Q |
9 |
atacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
89 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||||| | || ||||| |||| |||| | ||||||| |||||| |
|
|
| T |
41704073 |
atacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggttcatcatct |
41703993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 35048852 - 35048592
Alignment:
| Q |
8 |
catacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgct |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35048852 |
catacatctagcatagctcttgtaatatttgataacttcttcttcagaactaaatgtcatcccaatcctaggttcctcatctgcttgaacaatatttgct |
35048753 |
T |
|
| Q |
108 |
tctaaattttcatcactattttcatttatgcgatcaacctcctcttggacagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacaca |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
35048752 |
tctaaattttcatcactgttttcatttatgtgatcaacctcctcttggacagaagaagtagatcccgtttccactaatgcagcaaattttacaaaacaca |
35048653 |
T |
|
| Q |
208 |
aacttaaattaatcaactaaaattcacaagtagatataacatgatttctatatatctaacta |
269 |
Q |
| |
|
||||||||| |||||||| ||||| |||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
35048652 |
aacttaaatcaatcaact-aaattaacaagtggatataacatgatttctaaatatctaacta |
35048592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 15636041 - 15636292
Alignment:
| Q |
8 |
catacatctagcataactcttgtaa-tatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgc |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15636041 |
catacatctagcataactcttgtaaatatttggtaatttcttcttcataactaaatgtcatcccaatcctaggtt--------gcttgaacaatatttgc |
15636132 |
T |
|
| Q |
107 |
ttctaaattttcatcactattttcatttatgcgatcaacctcctcttggacagaagaagtagatcccgtctccactaa-tgcagaaaattttacaaaaca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15636133 |
ttctaaattttcatcactattttcattta---------cctcctcttggacagaagaagtagatcccgtctccactaaatgcagaaaattttacaaaaca |
15636223 |
T |
|
| Q |
206 |
caaacttaaattaatcaactaaaattcacaagtagatataacatgatttctatatatctaactatataaa |
275 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15636224 |
caaacttaaatcaatcaact-aaattaacaagtggatataacatgatttctatatatctaactagataaa |
15636292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 20007842 - 20008108
Alignment:
| Q |
8 |
catacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgct |
107 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||| |||||||||| || ||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
20007842 |
catacatctagcatagctcttataatatctggtaacttcttcttcataattaaatgtcatcccaatcctagattcttcatttgcttgaacaatatttgct |
20007941 |
T |
|
| Q |
108 |
tctaaattttcatcactattttcatttatgcgatcaacctcctcttggacagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacaca |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20007942 |
tctaaattttaatcactattttcatttaggtgatcaacctcctcttggacagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacaca |
20008041 |
T |
|
| Q |
208 |
aacttaaattaatcaactaaaattcacaagtagatataacatgatttctatatatctaactatataaa |
275 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20008042 |
aacttaaactaatcaact-aaattaacaagtggatataacatgatttctatatatctaactaaataaa |
20008108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 269
Target Start/End: Complemental strand, 49622579 - 49622347
Alignment:
| Q |
36 |
ttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcattta |
135 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
49622579 |
ttggtaacttcttcttcagaactaaatgtcatcccaatcctaggttcatcatctgattgaacaatatttgcttctaaattttcatcattgttttcattta |
49622480 |
T |
|
| Q |
136 |
tgcgatcaacctcctcttggacagaagaagtagatcccgtctccactaatgcagaaaattttacaaaacacaaacttaaattaatcaactaaaattcaca |
235 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
49622479 |
tgtgatcaacctcctcttggacagaaaaagtagatcccgtttccactaatgcagcaaattttacgaaacacaaacttaaattaatcaact-aaattaaca |
49622381 |
T |
|
| Q |
236 |
agtagatataacatgatttctatatatctaacta |
269 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| |
|
|
| T |
49622380 |
agtggatataacatgatttctaaatatctaacta |
49622347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 54078471 - 54078551
Alignment:
| Q |
9 |
atacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatct |
89 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||||| | || ||||| |||| |||| | ||||||| |||||| |
|
|
| T |
54078471 |
atacatctagcataattcttgtaatatttgtcaacttcttctgtagaattaaatttcatgccaaccttaggttcatcatct |
54078551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 9284847 - 9284910
Alignment:
| Q |
8 |
catacatctagcataactcttgtaatatttggtaatttcttcttcaaaactaaatgtcatccca |
71 |
Q |
| |
|
|||||||| | ||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
9284847 |
catacatcaaacataattcttgtaatatgtggtaatttcttcttcggaactaaatgtcatccca |
9284910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 1177974 - 1177850
Alignment:
| Q |
46 |
cttcttcaaaactaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttatgcgatcaac |
145 |
Q |
| |
|
|||||||| ||| ||||| |||||||| | || |||| || || |||||| ||||||||||||||||||| ||| | || |||||||||| |||| | |
|
|
| T |
1177974 |
cttcttcagaacaaaatgacatcccaaccttaagttcatctgcttcttgaataatatttgcttctaaatttccattgcaatattcatttatgtgatcgat |
1177875 |
T |
|
| Q |
146 |
ctcctcttggacagaagaagtagat |
170 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
1177874 |
ctcctcttaattagaagaagtagat |
1177850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 7495015 - 7494890
Alignment:
| Q |
25 |
tcttgtaatatttggtaatttcttcttcaaaactaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaattttcatcact |
124 |
Q |
| |
|
||||||| ||||||||| ||||||||| |||||||||||||| || | || | ||||||| | |||||||||||| |||| ||||| ||||| | |
|
|
| T |
7495015 |
tcttgtagcatttggtaaattcttcttccggactaaatgtcatcctaaccttaag---ttcatcttcatgaacaatattttcttcaaaattatcatctca |
7494919 |
T |
|
| Q |
125 |
attttcatttatgcgatcaacctcctctt |
153 |
Q |
| |
|
||| ||||||||| ||||| |||||||| |
|
|
| T |
7494918 |
attctcatttatgtgatcactctcctctt |
7494890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University