View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-28 (Length: 215)
Name: NF1484-Insertion-28
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-28 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 23391743 - 23391868
Alignment:
| Q |
8 |
atacataccttttgtccttcttgaaattgatcctccttctaataaatgcaagatgaatgattttttggaccaggcacaagaatgaattatatatacgttt |
107 |
Q |
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| T |
23391743 |
atacataccttttgtccttcttgaaattgatcctccttctaataaatgcaagatgaatgattttttggaccaggcacaagaatgaattatatatacgttt |
23391842 |
T |
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| Q |
108 |
gatacaaatgataacgaaaggtaatg |
133 |
Q |
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| T |
23391843 |
gatacaaatgataacgaaaggtaatg |
23391868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 179
Target Start/End: Original strand, 23391884 - 23391915
Alignment:
| Q |
148 |
gaataaataacgaaaggtaatgttaaaaatag |
179 |
Q |
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| T |
23391884 |
gaataaataacgaaaggtaatgttaaaaatag |
23391915 |
T |
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