View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484-Insertion-30 (Length: 202)
Name: NF1484-Insertion-30
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-30 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 19719763 - 19719962
Alignment:
| Q |
2 |
ccaacagagacatcccttgtaacgacacttgtgttgtttgtgaatccttagtgatctcacatgcatatgttctttgtttgtaccaagacaaaagaatgtt |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19719763 |
ccaatagagacatcccttgtaacgacacttgtgttgtttgtgaatccttagtgatctcacatgcatatgttctttgtttgtaccaagacaaaagaatgtt |
19719862 |
T |
|
| Q |
102 |
gggagggcattggtttagtaacaatggtccgggagttgctccaccaagctaacaattttacaactctattgtttgaattttttggcaggttgcctcctcc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19719863 |
gggagggcattggtttagtaacaatggtccgggagttgctccaccaagctaacaattttacaactctattg-ttgaattttttggcaggttgcctcctcc |
19719961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University