View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-4 (Length: 547)
Name: NF1484-Insertion-4
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 33 - 527
Target Start/End: Complemental strand, 37809535 - 37809048
Alignment:
| Q |
33 |
gtgatacggggaaaatataggtgcaacgagaatggagaggagcttagcgtgaaatcaagttattcaagtctttgaaagcccatttcaattgtgtcccaaa |
132 |
Q |
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| T |
37809535 |
gtgatacggggaaaatataggtgcaacgagaatggagaggagcttagcgtgaaatcaagttattcaagtctttgaaagcccat-------gtgtcccaaa |
37809443 |
T |
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| Q |
133 |
ttgaaggattattgttactggtcttcaggtgatagagctcggattaaagtagcattgcaaaatactgcaattattgtggtagtatagtggaagacaatgc |
232 |
Q |
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| T |
37809442 |
ttgaaggattattgttactggtcttcaggtgatagagctcggattaaagtagcattgcaaaatactgcaattattgtggtagtatagtggaagacaatgc |
37809343 |
T |
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| Q |
233 |
taagagattgtcctattggtatgtctctttggttgaatgtgatttctcttaatatgagtaataatgatgttaaagtggaatagcaagatgtttatggaag |
332 |
Q |
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| T |
37809342 |
taagagattgtcctattggtatgtctctttggttgaatgtgatttctcttaatatgagtaataatgatgttaaagtggaatagcaagatgtttatggaag |
37809243 |
T |
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| Q |
333 |
ggtttttgggctgtttatggtatttgaggaatatgataacactttttggaggccaaagttttcagctcttcatatcatgaagctttagttattcttggtt |
432 |
Q |
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| T |
37809242 |
ggtttttgggctgtttatggtattggaggaatatgataacactttttggaggccaaagttttcagctcttcatatcatgaagctttagttattcttggtt |
37809143 |
T |
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| Q |
433 |
tgccaatggatgataatgtttgttattaggagtctttgtcacttgtcaggagcttatgttatgggaatttttgttcttcaattgattctttttag |
527 |
Q |
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| T |
37809142 |
tgccaatggatgataatgtttgttattaggagtctttgtcacttgtcaggagcttatgttataggaatttttgttcttcaattgattctttttag |
37809048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 417
Target Start/End: Complemental strand, 2809144 - 2809065
Alignment:
| Q |
337 |
tttgggctgtttatggtatttgaggaatatgataacactttttggaggccaaagttttcagctcttcatatcatgaagctt |
417 |
Q |
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| T |
2809144 |
tttgggatgtttatggtattggagtac-atgataatacatttcggaggctaaagttttcagctcttcatgtgatgaagctt |
2809065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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