View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484-Insertion-7 (Length: 613)

Name: NF1484-Insertion-7
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484-Insertion-7
NF1484-Insertion-7
[»] scaffold0564 (2 HSPs)
scaffold0564 (8-528)||(7527-8047)
scaffold0564 (560-613)||(7459-7512)


Alignment Details
Target: scaffold0564 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Complemental strand, 8047 - 7527
Alignment:
Q  8 cttttaaagctctaaaggctaatcttggaagtttcaaatttggaccacacaaacgcatgtatgcacatgcaaaataccgacatcactcagcaagcatcat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8047 cttttaaagctctaaaggctaatcttggaagtttcaaatttggaccacacaaacgcatgcatgcacatgcaaaataccgacatcactcagcaagcatcat 7948  T
Q  108 ttgtctggtttcaggaattcaattcaatctctatggttacaatctactacaaatgttagacatttttacattataaaaataatgtctccacaatggtcga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7947 ttgtctggtttcaggaattcaattcaatctctatggttacaatctactacaaatattagacatttttacattataaaaataatgtctccacaatggtcga 7848  T
Q  208 gtctagataaaatgtagcaagaaattagatctttgtagtctacttgaatctgatttcgcaaaacatgtacctataatatgcttagacatgtatccttaag 307  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7847 gtctagataaaatgtagcaagaaattagatcattgtagtctacttgaatctgatttcgcaaaacatgtacctataatatgcttagacatgtatccttaag 7748  T
Q  308 tagtgggctaccataagagctcaatcactagtcaaatattacatgttgtgtgccttgtcccaaacaaccctatcccagacaatgaagctgacacttatgt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7747 tagtgggctaccataagagctcaatcactagtcaaatattacatgttgtgtgccttgtcccaaacaaccctatcccagacaatgaagctgacacttatgt 7648  T
Q  408 cttcaacagtgtctgcattgaatcgtgtttcaacaatatgctaaagtatcaagtatgctaattttaaataacttccaacaaaaaactctacaaggtgtat 507  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7647 cttcaacagtatctgcattgaatcgtgtttcaacaatatgctaaagtatcaagtatgctaattttaaataacttccaacaaaaaactctacaaggtgtat 7548  T
Q  508 ctgttttcttttaaagatctg 528  Q
    ||||    |||||||||||||    
T  7547 ctgtcaaattttaaagatctg 7527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 560 - 613
Target Start/End: Complemental strand, 7512 - 7459
Alignment:
Q  560 gtcttcgaccgcgatcaatgcaactgcaagtgaagcctcatcagctatttcatc 613  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7512 gtcttcgaccgcgatcaatgcaactgcaattgaagcctcatcagctatttcatc 7459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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