View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484-Insertion-9 (Length: 468)
Name: NF1484-Insertion-9
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484-Insertion-9 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 468
Target Start/End: Complemental strand, 18685381 - 18684941
Alignment:
| Q |
7 |
acaaagaacacaaacggtatttacctgtttgttagcagcggtatcccagagctgaacatgtgaattcgtcaatccaacggctaaatggcgtccatctgga |
106 |
Q |
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| T |
18685381 |
acaaagaacacaaacggtatttacctgtttgttagcagcggtatcccagagctgaacatgtgaattcgtcaatccaacggctaaatggcgtccatctgga |
18685282 |
T |
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| Q |
107 |
gcccaacacacacttgtgaccggaccctcttcttcatcgacagtgacaaattcagacccggaactatccgaggcattccaaaaataaatggtatgatcaa |
206 |
Q |
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| T |
18685281 |
gcccaacacacacttgtgaccggaccctcttcttcatcgacagtgacaaattcagacccggaactatccgaggcattccaaaaataaatggtatgatcaa |
18685182 |
T |
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| Q |
207 |
gtgcgatgctaaggacattacgtgagccccaatctaacaaattcaaggagaaatcgtccgagagatcaggaagatcgaaagtaccctcacaagtctgcaa |
306 |
Q |
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| T |
18685181 |
gtgcgatgctaaggacattacgtgagccccaatctaacaaattcaaggagaaatcgtccgagagatcaggaagatcgaaagtaccctcacaagtctgcaa |
18685082 |
T |
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| Q |
307 |
aatcaatattttgtcacaaacacataaacaaccataaaattagaataaaaaatggcatataactaactacaaacaactgaaagaataatatttagaaagg |
406 |
Q |
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| T |
18685081 |
aatcaatattttgtcacaaacac---------------------aaaaaaaatggcatataactaactacaaacaattgaaagaataatatttagaaagg |
18685003 |
T |
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| Q |
407 |
catcacatgtgtctgacaccggacacacatttgatcagaggtgttagtgcaacaaagttggc |
468 |
Q |
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| T |
18685002 |
catcacatgtgtctgacaccgaacacacatttgatcagaggtgttagtgctacaaagttggc |
18684941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 13119750 - 13119837
Alignment:
| Q |
24 |
tatttacctgtttgttagcagcggtatcccagagctgaacatgtgaattcgtcaatccaacggctaaatggcgtccatctggagccca |
111 |
Q |
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| T |
13119750 |
tatttacctgtttcttagcagttgtatcccagatttgaacaagggaattgttcaacccaacggctaaatggcatccatcttgagccca |
13119837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 43527278 - 43527409
Alignment:
| Q |
24 |
tatttacctgtttgttagcagcggtatcccagagctgaacatgtgaattcgtcaatccaacggctaaatggcgtccatctggagcccaacacacacttgt |
123 |
Q |
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| T |
43527278 |
tatttacctgtttacaagcagtggtatcccagagctggacatgggagttgttcaacccaatggctaaatggcgaccatcgggggcccagctaacgcttgt |
43527377 |
T |
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| Q |
124 |
gaccggaccctcttcttcatcgacagtgacaa |
155 |
Q |
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| T |
43527378 |
gacaggaccatcatcatcatctacagtgacaa |
43527409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 455
Target Start/End: Complemental strand, 29911376 - 29911343
Alignment:
| Q |
422 |
acaccggacacacatttgatcagaggtgttagtg |
455 |
Q |
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| T |
29911376 |
acaccggacacacgtttgatcagaggtgttagtg |
29911343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 11602857 - 11602816
Alignment:
| Q |
415 |
gtgtctgacaccggacacacatttgatcagaggtgttagtgc |
456 |
Q |
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| T |
11602857 |
gtgtcggacaccggacacacctttgatcagaggtgttggtgc |
11602816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 451
Target Start/End: Original strand, 15086752 - 15086788
Alignment:
| Q |
415 |
gtgtctgacaccggacacacatttgatcagaggtgtt |
451 |
Q |
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| T |
15086752 |
gtgtcggacaccggacacacatttgatcaaaggtgtt |
15086788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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