View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14840_high_1 (Length: 496)
Name: NF14840_high_1
Description: NF14840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14840_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 272 - 481
Target Start/End: Complemental strand, 41480018 - 41479809
Alignment:
| Q |
272 |
caaaaacggaaaggcaaactgaaactacatgagtctaagtggaagagacgacagaggataaaaaggcatgaggagatgtcaacttagaaaactgatacca |
371 |
Q |
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| T |
41480018 |
caaaaacggaaaggcaaactgaaactacatgagtctaagtggaagagacgacagaggataaaaaggcatgaggagatgtcaacttagaaaactgatacca |
41479919 |
T |
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| Q |
372 |
atttaaaagaaaggattccagaaattaacttttcattacttctcaacaggtttcattacataagattacaacttcaagaactagaactagcataagtgga |
471 |
Q |
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| T |
41479918 |
atttaaaagaaaggattccagaaattaacttttcattacttctcaacaggtttcattacataagattacaacttcaagaactagaactagcataagtgga |
41479819 |
T |
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| Q |
472 |
cttaaagtct |
481 |
Q |
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| T |
41479818 |
cttaaagtct |
41479809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 24084655 - 24084553
Alignment:
| Q |
78 |
tatcttaatagagggtgagattcatcagagtgaaattgaagagatagttggatatggagatgaagtggaagagaatgagatacttgaagttgaggatgga |
177 |
Q |
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| T |
24084655 |
tatcttaatagagggtgagactcatgagagtgaaattgaagagatagttggagatggagatgaaatggaagagaatgagatacttgaagttgaggatgaa |
24084556 |
T |
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| Q |
178 |
cta |
180 |
Q |
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||| |
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| T |
24084555 |
cta |
24084553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 24084564 - 24084511
Alignment:
| Q |
199 |
gaggatgaaccagaaagtagtttggatttcttagttatgacttatgtctttattt |
253 |
Q |
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| T |
24084564 |
gaggatgaactagaaagtagttaggatttatgagttatg-cttatgtctttattt |
24084511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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