View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14840_low_2 (Length: 276)

Name: NF14840_low_2
Description: NF14840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14840_low_2
NF14840_low_2
[»] chr8 (3 HSPs)
chr8 (69-269)||(44687220-44687420)
chr8 (23-69)||(44687138-44687184)
chr8 (179-240)||(44692021-44692082)
[»] chr2 (6 HSPs)
chr2 (18-68)||(25302794-25302844)
chr2 (17-68)||(25306788-25306839)
chr2 (17-68)||(41602433-41602484)
chr2 (69-107)||(41602521-41602559)
chr2 (69-107)||(25306876-25306914)
chr2 (68-104)||(25302880-25302916)
[»] chr5 (1 HSPs)
chr5 (17-68)||(8081486-8081537)
[»] chr4 (3 HSPs)
chr4 (17-68)||(8005887-8005938)
chr4 (69-107)||(8005975-8006013)
chr4 (17-47)||(24807518-24807548)
[»] chr3 (5 HSPs)
chr3 (17-68)||(35244148-35244199)
chr3 (17-55)||(35243927-35243965)
chr3 (69-107)||(35244236-35244274)
chr3 (69-107)||(27972663-27972701)
chr3 (17-60)||(41874493-41874537)
[»] chr1 (2 HSPs)
chr1 (17-68)||(33773184-33773235)
chr1 (69-107)||(33773272-33773310)
[»] chr7 (1 HSPs)
chr7 (73-105)||(30511232-30511264)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 69 - 269
Target Start/End: Original strand, 44687220 - 44687420
Alignment:
Q  69 tatgggaccttgatactcggcatcctctgattcataatagcattaatcattatcataaccaatgaaattaggtttgagcaagcaatcctaaactatgcga 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44687220 tatgggaccttgatactcggcatcctctgattcataatagcattaatcattatcataaccaatgaaattaggtttgagcaagcaatcctaaactatgcga 44687319  T
Q  169 gagcctaatattatacttttggagcggggaggagattgagtttaaataataatgaaggagaataacaacataagaaattacgatatatgatgtagattgc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44687320 gagcctaatattatacttttggagcggggaggagattgagtttaaataataatgaaggagaataacaacataagaaattacgatatatgatgtagattgc 44687419  T
Q  269 t 269  Q
    |    
T  44687420 t 44687420  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 44687138 - 44687184
Alignment:
Q  23 atgtatcatttcaatcatcttttatacaattgtttcttagtgatgat 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44687138 atgtatcatttcaatcatcttttatacaattgtttcttagtgatgat 44687184  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 44692021 - 44692082
Alignment:
Q  179 ttatacttttggagcggggaggagattgagtttaaataataatgaaggagaataacaacata 240  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  44692021 ttatacttttggagcggggagaagattgagcttaaataataaggaaggagagtaacaacata 44692082  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 25302794 - 25302844
Alignment:
Q  18 cactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25302794 cactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 25302844  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 25306788 - 25306839
Alignment:
Q  17 acactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 68  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25306788 acactcatgtaacatttcaatcatcttttatacaattgtttcttagtgatga 25306839  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 41602433 - 41602484
Alignment:
Q  17 acactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 68  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  41602433 acactcatgtatcatttcaaccaccttttatacaattgtttcttagtgatga 41602484  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 41602521 - 41602559
Alignment:
Q  69 tatgggaccttgatactcggcatcctctgattcataata 107  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41602521 tatgggaccttgatactcggcatcctctgattcataata 41602559  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 25306876 - 25306914
Alignment:
Q  69 tatgggaccttgatactcggcatcctctgattcataata 107  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  25306876 tatgggaccttgatactcggcatcctctaattcataata 25306914  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 25302880 - 25302916
Alignment:
Q  68 atatgggaccttgatactcggcatcctctgattcata 104  Q
    |||||||||||||||||||| |||||||| |||||||    
T  25302880 atatgggaccttgatactcgacatcctctaattcata 25302916  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 8081486 - 8081537
Alignment:
Q  17 acactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 68  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  8081486 acacccatgtatcatttcaatcatcttttatacaattgtttcttagtaatga 8081537  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 8005887 - 8005938
Alignment:
Q  17 acactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 68  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  8005887 acactcatgtatcatttcaatcatcttttattcaattgtttctttgtgatga 8005938  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 8005975 - 8006013
Alignment:
Q  69 tatgggaccttgatactcggcatcctctgattcataata 107  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  8005975 tatgggaccttgacactcggcatcctctgattcataata 8006013  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 24807518 - 24807548
Alignment:
Q  17 acactcatgtatcatttcaatcatcttttat 47  Q
    |||||||||||||||||||||||||||||||    
T  24807518 acactcatgtatcatttcaatcatcttttat 24807548  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 35244148 - 35244199
Alignment:
Q  17 acactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 68  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  35244148 acactcatgtatcatttcaatcatcttttatataattttttcttagtgatga 35244199  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 35243965 - 35243927
Alignment:
Q  17 acactcatgtatcatttcaatcatcttttatacaattgt 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35243965 acactcatgtatcatttcaatcatcttttatacaattgt 35243927  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 35244236 - 35244274
Alignment:
Q  69 tatgggaccttgatactcggcatcctctgattcataata 107  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  35244236 tatgggaccttgatactcgacatcctctgattcataata 35244274  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 27972663 - 27972701
Alignment:
Q  69 tatgggaccttgatactcggcatcctctgattcataata 107  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  27972663 tatgggaccttgatattcggtatcctctgattcataata 27972701  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 41874493 - 41874537
Alignment:
Q  17 acactcatgtatcatttcaatcatc-ttttatacaattgtttctt 60  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||    
T  41874493 acactcatgtaccatttcaattatctttttatacaattgtttctt 41874537  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 33773184 - 33773235
Alignment:
Q  17 acactcatgtatcatttcaatcatcttttatacaattgtttcttagtgatga 68  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  33773184 acactcatgtatcatttccatcatcttttatacaattgttttttagtgatga 33773235  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 33773272 - 33773310
Alignment:
Q  69 tatgggaccttgatactcggcatcctctgattcataata 107  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  33773272 tatgggaccttgatactcgacatcctctaattcataata 33773310  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 30511232 - 30511264
Alignment:
Q  73 ggaccttgatactcggcatcctctgattcataa 105  Q
    |||||||||||||||||||||||||||||||||    
T  30511232 ggaccttgatactcggcatcctctgattcataa 30511264  T

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