View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14841_high_1 (Length: 609)

Name: NF14841_high_1
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14841_high_1
NF14841_high_1
[»] chr8 (4 HSPs)
chr8 (8-377)||(25890961-25891330)
chr8 (8-56)||(18309115-18309163)
chr8 (132-377)||(37718866-37719111)
chr8 (306-342)||(42649412-42649448)
[»] chr7 (14 HSPs)
chr7 (379-600)||(17504182-17504405)
chr7 (379-600)||(17548809-17549032)
chr7 (191-377)||(17504433-17504619)
chr7 (191-377)||(17548595-17548781)
chr7 (8-195)||(17506963-17507150)
chr7 (8-195)||(17546064-17546251)
chr7 (26-281)||(15645130-15645385)
chr7 (132-207)||(551599-551674)
chr7 (289-344)||(45165468-45165523)
chr7 (320-370)||(29557447-29557497)
chr7 (302-344)||(39694660-39694702)
chr7 (123-205)||(45976461-45976543)
chr7 (314-373)||(6343520-6343579)
chr7 (269-342)||(551464-551537)
[»] chr3 (3 HSPs)
chr3 (45-377)||(14853834-14854166)
chr3 (379-446)||(14854194-14854261)
chr3 (156-208)||(18381101-18381153)
[»] chr6 (5 HSPs)
chr6 (26-377)||(7956544-7956879)
chr6 (51-377)||(18588290-18588616)
chr6 (379-600)||(7956293-7956516)
chr6 (379-598)||(18588644-18588864)
chr6 (302-373)||(15602513-15602584)
[»] chr1 (3 HSPs)
chr1 (8-100)||(39584913-39585005)
chr1 (302-373)||(30712759-30712830)
chr1 (128-207)||(9991071-9991150)
[»] chr4 (3 HSPs)
chr4 (302-372)||(54684799-54684869)
chr4 (289-344)||(19163086-19163141)
chr4 (302-345)||(40688256-40688299)
[»] scaffold0024 (1 HSPs)
scaffold0024 (269-342)||(87113-87186)
[»] chr5 (3 HSPs)
chr5 (39-89)||(32239704-32239754)
chr5 (302-344)||(36255968-36256010)
chr5 (44-89)||(17674020-17674065)
[»] scaffold0351 (1 HSPs)
scaffold0351 (289-344)||(12901-12956)
[»] chr2 (5 HSPs)
chr2 (302-344)||(6727686-6727728)
chr2 (302-374)||(1468185-1468257)
chr2 (418-521)||(44028918-44029021)
chr2 (302-344)||(2207731-2207773)
chr2 (300-377)||(44029082-44029159)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 25890961 - 25891330
Alignment:
Q  8 cagagaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacatta 107  Q
    ||||||||||| ||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |||    
T  25890961 cagagaccacagctccccaaagcaagaacaagagagaaacaaatgacgagcatcctccacctggccacaccccgaaatacacaaagaatcggccacttta 25891060  T
Q  108 agaataccacgtgatgccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaa 207  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  25891061 agtataccacgtgatgccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacacctttagaggaacctgattatgccaaa 25891160  T
Q  208 ctaggtcggcaacctgagtaacctgcggtacctcctgagatatgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactg 307  Q
     |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  25891161 ttaggtcggcaacctgagtaacctgcggtacctcctgagttgtgagcatataatacacagaacggccagaataaacgcctgagggatctggtaaccactg 25891260  T
Q  308 ccatacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 377  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25891261 ccacacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 25891330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 18309163 - 18309115
Alignment:
Q  8 cagagaccacatctccctaaagcaaggacacgagagaaacaaatgacta 56  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  18309163 cagagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 18309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 377
Target Start/End: Original strand, 37718866 - 37719111
Alignment:
Q  132 gatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaactaggtcggcaacctgagtaacct 231  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||| |||||||||||||   ||||||| ||||||| || ||  ||||||  |||   |||||    
T  37718866 gatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacacctttaagggaacctgtttatgcctaattaaatcggcattctgcaaaacct 37718965  T
Q  232 gcggtacctcctgagatatgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccatacatcataagaaagagcctg 331  Q
    |      |||||||| | ||||||||| ||||||   | ||||||||||  |  | |||||  | |||||||| ||||| ||| |||| ||||||| |||    
T  37718966 gaaaagtctcctgagttgtgagcatatcatacactccatgaacagagtagccttcggaagggcccggtaaccagtgccaaacaccatacgaaagaggctg 37719065  T
Q  332 caaagaaacattaagtaataacatcctacactcctctaaaagatcc 377  Q
    ||||||||||| |   ||||| | || ||||||| |||||||||||    
T  37719066 caaagaaacatcataaaataataaccgacactccgctaaaagatcc 37719111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 42649412 - 42649448
Alignment:
Q  306 tgccatacatcataagaaagagcctgcaaagaaacat 342  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  42649412 tgccacacatcataagaaagaggctgcaaagaaacat 42649448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 379 - 600
Target Start/End: Complemental strand, 17504405 - 17504182
Alignment:
Q  379 cactgccaagcctcacctccttcccccc-atccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgc 477  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17504405 cactgccaagcctcacctccttcccccccacccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgc 17504306  T
Q  478 tccctaaagggaacctgaccacaccaccgatcatgccaaaaaagtgtagactccccat-ccccacacgacgcgctacacactcattaaaccaaccaacac 576  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||    
T  17504305 tccctaaagggaacctcaccacaccaccgatcatgccaaaaaagagtagactccccatcccccacacgacgtgccacacactcattaaaccaaccaacac 17504206  T
Q  577 cgccccctaccccatctctaatct 600  Q
    ||||||||||||||||||||||||    
T  17504205 cgccccctaccccatctctaatct 17504182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 379 - 600
Target Start/End: Original strand, 17548809 - 17549032
Alignment:
Q  379 cactgccaagcctcacctccttcccccc-atccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgc 477  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17548809 cactgccaagcctcacctccttcccccccacccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgc 17548908  T
Q  478 tccctaaagggaacctgaccacaccaccgatcatgccaaaaaagtgtagactccccat-ccccacacgacgcgctacacactcattaaaccaaccaacac 576  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||    
T  17548909 tccctaaagggaacctcaccacaccaccgatcatgccaaaaaagagtagactccccatcccccacacgacgtgccacacactcattaaaccaaccaacac 17549008  T
Q  577 cgccccctaccccatctctaatct 600  Q
    ||||||||||||||||||||||||    
T  17549009 cgccccctaccccatctctaatct 17549032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 191 - 377
Target Start/End: Complemental strand, 17504619 - 17504433
Alignment:
Q  191 aacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctgagatatgagcatataatacacagaacgaacagagtaaacgcctgaa 290  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17504619 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17504520  T
Q  291 ggatctggtaaccactgccatacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 377  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17504519 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 17504433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 191 - 377
Target Start/End: Original strand, 17548595 - 17548781
Alignment:
Q  191 aacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctgagatatgagcatataatacacagaacgaacagagtaaacgcctgaa 290  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17548595 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17548694  T
Q  291 ggatctggtaaccactgccatacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 377  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17548695 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 17548781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 17507150 - 17506963
Alignment:
Q  8 cagagaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacatta 107  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17507150 cagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcacatta 17507051  T
Q  108 agaataccacgtgatgccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacct 195  Q
    || |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17507050 agtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 17546064 - 17546251
Alignment:
Q  8 cagagaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacatta 107  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17546064 cagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcacatta 17546163  T
Q  108 agaataccacgtgatgccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacct 195  Q
    || |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17546164 agtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17546251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 26 - 281
Target Start/End: Original strand, 15645130 - 15645385
Alignment:
Q  26 aaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgcc 125  Q
    |||||||||||| |||| ||||||||||  ||||||||||||||||||||||||||||| ||||  |||| ||  ||||||||  |||||||||||||||    
T  15645130 aaagcaaggacaagagaaaaacaaatgatgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgtgatgcc 15645229  T
Q  126 atattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaactaggtcggcaacctgag 225  Q
    |  |||||||||||||| |||  |||||||||||| ||||| ||||||| ||||||||||||  ||| ||| |||||||||| ||| ||   | ||||||    
T  15645230 aagttagatttagtaggaaggtaatcacggagcagccgccaagcaaagactgacacctttagtggaatctgtttatgccaaattagatctaaatcctgag 15645329  T
Q  226 taacctgcggtacctcctgagatatgagcatataatacacagaacgaacagagtaa 281  Q
    |||||||| ||||||| |||| | ||  ||||  |||||||||||||||| |||||    
T  15645330 taacctgcagtacctcgtgagttgtggtcataacatacacagaacgaacatagtaa 15645385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 551674 - 551599
Alignment:
Q  132 gatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaa 207  Q
    ||||| ||||| | ||||||||||| ||| ||||| ||||| ||||||||||||| | ||||||| ||||||||||    
T  551674 gatttggtaggcaagcgatcacggatcagccgccaagcaaaaattgacacctttaaaggaacctgtttatgccaaa 551599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 45165523 - 45165468
Alignment:
Q  289 aaggatctggtaaccactgccatacatcataagaaagagcctgcaaagaaacatta 344  Q
    |||| ||||||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  45165523 aagggtctggttgccactgccacacatcataagaaagaggctgcaaagaaacatta 45165468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 29557447 - 29557497
Alignment:
Q  320 agaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaa 370  Q
    |||||||  |||||||||||||| ||||| |||||||||||||||||||||    
T  29557447 agaaagattctgcaaagaaacatcaagtagtaacatcctacactcctctaa 29557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 39694660 - 39694702
Alignment:
Q  302 ccactgccatacatcataagaaagagcctgcaaagaaacatta 344  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  39694660 ccactgccacacatcataagaaagaggctgcaaagaaacatta 39694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 45976543 - 45976461
Alignment:
Q  123 gccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgcca 205  Q
    |||| ||||||||||||||| ||||||||||  ||||| ||||| ||||| || |||||||||| || |||||  ||||||||    
T  45976543 gccaaattagatttagtaggaaggcgatcacaaagcagccgccaagcaaaaatagacacctttaaaaaaacctatttatgcca 45976461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 6343579 - 6343520
Alignment:
Q  314 atcataagaaagagcctgcaaagaaacattaagtaa-taacatcctacactcctctaaaag 373  Q
    |||| ||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  6343579 atcaaaagaaagaggctgcaaagaaacatta-gtaagtaacaacctacactcctctaaaag 6343520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 551537 - 551464
Alignment:
Q  269 acgaacagagtaaacgcctgaaggatctggtaaccactgccatacatcataagaaagagcctgcaaagaaacat 342  Q
    ||||||||||||| |  | ||||| || |||||||||||||| |||||| | ||| ||| ||||||||||||||    
T  551537 acgaacagagtaaccttcggaagggtccggtaaccactgccaaacatcaaacgaaggaggctgcaaagaaacat 551464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 6e-88; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 45 - 377
Target Start/End: Original strand, 14853834 - 14854166
Alignment:
Q  45 aacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgccatattagatttagtaggta 144  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||  |||| |   ||||||||  ||||||||||||||||  ||||||||||||||      
T  14853834 aacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaagcatccacattaattataccacgtgatgccaagttagatttagtaggag 14853933  T
Q  145 ggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctg 244  Q
    | |||||||||||||| ||||| ||||||| |||||||||||| |||||||| ||||||||||  |  ||| || |||||||||||||||||||||||||    
T  14853934 gacgatcacggagcagccgccaagcaaagactgacacctttaggagaacctgtttatgccaaatcaaatcgacatcctgagtaacctgcggtacctcctg 14854033  T
Q  245 agatatgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccatacatcataagaaagagcctgcaaagaaacatta 344  Q
    || | ||||||||  ||||| |||||||||| ||||| | ||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  14854034 agttgtgagcataacatacatagaacgaacaaagtaatcacctgagggatccggtaaccactgccacacatcataagaaagagactgcaaagaaacatta 14854133  T
Q  345 agtaataacatcctacactcctctaaaagatcc 377  Q
    || | |||||| |||||||||||||||||||||    
T  14854134 agaagtaacattctacactcctctaaaagatcc 14854166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 379 - 446
Target Start/End: Original strand, 14854194 - 14854261
Alignment:
Q  379 cactgccaagcctcacctccttccccccatccttgtaaaaacatatcttttaccattatagatttatt 446  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||    
T  14854194 cactgccaagcctcacctccttccccccacccttgtaaaaacatatctttaaccgttattgatttatt 14854261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 18381101 - 18381153
Alignment:
Q  156 agcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaac 208  Q
    |||| ||||||||||||||| || ||||||||  ||||||| |||||||||||    
T  18381101 agcattcgccacgcaaagatagaaacctttaggggaacctgcttatgccaaac 18381153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 7e-63; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 26 - 377
Target Start/End: Complemental strand, 7956879 - 7956544
Alignment:
Q  26 aaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgcc 125  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||  |||| ||  ||||||||  |||||||| ||||||    
T  7956879 aaagcaaggacatgagagaaacaaatgacgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgagatgcc 7956780  T
Q  126 atattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaactaggtcggcaacctgag 225  Q
    |  |||||||||||||| ||||||||||||||||  ||||| ||||||| ||||||||||||  ||||||| |||||||||| ||  ||| || ||| ||    
T  7956779 aagttagatttagtaggaaggcgatcacggagcaaccgccaagcaaagactgacacctttaggggaacctgtttatgccaaattaaatcgacatcctaag 7956680  T
Q  226 taacctgcggtacctcctgagatatgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccatacatcataagaaag 325  Q
    |||| ||||                |||||||  ||||| |||||||||| ||||| |  |||| ||||| |||||||||||||| ||||||||||||||    
T  7956679 taacatgcg----------------gagcataacatacatagaacgaacaaagtaaccttctgagggatccggtaaccactgccacacatcataagaaag 7956596  T
Q  326 agcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 377  Q
    || |||||||||||||||| | | ||||| |||| |||||||||||||||||    
T  7956595 agactgcaaagaaacattatgaagtaacaacctagactcctctaaaagatcc 7956544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 51 - 377
Target Start/End: Original strand, 18588290 - 18588616
Alignment:
Q  51 tgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgccatattagatttagtaggtaggcgat 150  Q
    |||| ||||||||||||| ||||||||| ||||| ||||  |||| |    ||||||| || ||||||| |||| | |||  |||| ||||| |||| ||    
T  18588290 tgacgagcatcctccacccggccacacctcgaaacacacatagaaacctctacattaataacaccacgtaatgcaaaatttaattttgtaggaaggcaat 18588389  T
Q  151 cacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaactaggtcggcaacctgagtaacctgcggtacctcctgagatat 250  Q
    ||| |||||| ||| | | ||| |||||||||||||   ||| ||| |||||||||| ||  ||| || ||||||||||||| || || | || || | |    
T  18588390 cacagagcagccgctaagtaaaaattgacacctttaagggaatctgtttatgccaaagtaaatcgacatcctgagtaacctggggaactttctaagttgt 18588489  T
Q  251 gagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccatacatcataagaaagagcctgcaaagaaacattaagtaat 350  Q
    |||||||  |||||||||||||||||||||| | | ||| ||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||| | |    
T  18588490 gagcatagcatacacagaacgaacagagtaacctcttgatggatccggtaaccactaccacacatcataagaaagaggctgcaaagaaacattaagaagt 18588589  T
Q  351 aacatcctacactcctctaaaagatcc 377  Q
    |||| ||||||||||||||||||||||    
T  18588590 aacaacctacactcctctaaaagatcc 18588616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 379 - 600
Target Start/End: Complemental strand, 7956516 - 7956293
Alignment:
Q  379 cactgccaagcctcacctccttccccccatccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgct 478  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||| |||| ||  | |||||| ||||||| ||| | ||| ||||    
T  7956516 cactgccaagcctcacctccttctccccacccttgtaaaaacatatctttaaccgttattgattgatgtaacgctaaaccatataacctgctaaagcgct 7956417  T
Q  479 ccctaaagggaacctgaccacaccaccgatcatgccaaaaaagtgtagactcccca-tccccacacgacgcgctacacactcattaaaccaaccaacacc 577  Q
    ||||||| ||||| | ||||||||||||||||||||||||||| || || | ||||  ||||||||||||| | ||||||||| ||||||||||  ||||    
T  7956416 ccctaaaaggaacatcaccacaccaccgatcatgccaaaaaagcgttgatttcccaccccccacacgacgcaccacacactcactaaaccaaccttcacc 7956317  T
Q  578 g-ccccctaccccatctctaatct 600  Q
    | ||||||||||| ||||||||||    
T  7956316 gcccccctaccccttctctaatct 7956293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 379 - 598
Target Start/End: Original strand, 18588644 - 18588864
Alignment:
Q  379 cactgccaagcctcacctccttccccccatccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgct 478  Q
    |||||||| |||||||||||||||||||| ||| | |||||||||||||| ||  |||| |||||||  | |  |||  |||||| ||| | ||| ||||    
T  18588644 cactgccatgcctcacctccttccccccaccctcgaaaaaacatatctttaactgttattgatttatgcatcattaaatcatataacctgctaaagcgct 18588743  T
Q  479 ccctaaagggaacctgaccacaccaccgatcatgccaaaaaagtgtagactccccatccc-cacacgacgcgctacacactcattaaaccaaccaacacc 577  Q
    ||||||| | ||| | ||||||||| ||||||||||||||||| || || |||||||||| |||||  ||| | ||||||||| ||||||| ||| ||||    
T  18588744 ccctaaaagaaacatcaccacaccaacgatcatgccaaaaaagcgttgattccccatcccgcacacatcgcaccacacactcactaaaccatccatcacc 18588843  T
Q  578 gccccctaccccatctctaat 598  Q
    |||||| | ||||||||||||    
T  18588844 gccccccaacccatctctaat 18588864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 15602513 - 15602584
Alignment:
Q  302 ccactgccatacatcataagaaagagcctgcaaagaaacattaagtaa-taacatcctacactcctctaaaag 373  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  15602513 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctctaaaag 15602584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 39584913 - 39585005
Alignment:
Q  8 cagagaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||    
T  39584913 cagagaccacaactccctaaagcaaggacacgagagaaacaaatgacgagcatcctccacctggccacaccccaaaatacacaaagaatcggt 39585005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 30712830 - 30712759
Alignment:
Q  302 ccactgccatacatcataagaaagagcctgcaaagaaacattaagtaa-taacatcctacactcctctaaaag 373  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| |||| ||||| ||||||||||||||||||    
T  30712830 ccactgccacacatcataagaaagaggctgcagagaaacatta-gtaagtaacaacctacactcctctaaaag 30712759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 9991071 - 9991150
Alignment:
Q  128 attagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgattatgccaaa 207  Q
    ||||||||||||||| ||| ||||||| ||||| ||||| ||||| || | |||||| ||  ||||||| ||||||||||    
T  9991071 attagatttagtaggaaggtgatcacgaagcagccgccaagcaaaaataggcaccttaagcggaacctgtttatgccaaa 9991150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 54684799 - 54684869
Alignment:
Q  302 ccactgccatacatcataagaaagagcctgcaaagaaacattaagtaa-taacatcctacactcctctaaaa 372  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||    
T  54684799 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctctaaaa 54684869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 19163141 - 19163086
Alignment:
Q  289 aaggatctggtaaccactgccatacatcataagaaagagcctgcaaagaaacatta 344  Q
    ||||||| |||  ||||||||| ||||||||||||||||  |||||||||||||||    
T  19163141 aaggatccggttgccactgccacacatcataagaaagaggttgcaaagaaacatta 19163086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 345
Target Start/End: Original strand, 40688256 - 40688299
Alignment:
Q  302 ccactgccatacatcataagaaagagcctgcaaagaaacattaa 345  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||    
T  40688256 ccactgccacacatcataagaaagaggctgcaatgaaacattaa 40688299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 87186 - 87113
Alignment:
Q  269 acgaacagagtaaacgcctgaaggatctggtaaccactgccatacatcataagaaagagcctgcaaagaaacat 342  Q
    |||||| |||||| | || | |||||| |||||||||||||| |||||||||||||||| ||||||||||||||    
T  87186 acgaaccgagtaacctccagcaggatccggtaaccactgccaaacatcataagaaagaggctgcaaagaaacat 87113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 32239704 - 32239754
Alignment:
Q  39 gagagaaacaaatgactagcatcctccacctggccacaccccgaaatacac 89  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  32239704 gagagaaacaaatgacgagcatcctccacctgaccacaccccgaaacacac 32239754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 36255968 - 36256010
Alignment:
Q  302 ccactgccatacatcataagaaagagcctgcaaagaaacatta 344  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  36255968 ccactgccacacatcataagaaagaggctgcaaagaaacatta 36256010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 17674020 - 17674065
Alignment:
Q  44 aaacaaatgactagcatcctccacctggccacaccccgaaatacac 89  Q
    ||||||||||| ||||||||||||||||||||| || |||| ||||    
T  17674020 aaacaaatgacgagcatcctccacctggccacaaccagaaacacac 17674065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 12956 - 12901
Alignment:
Q  289 aaggatctggtaaccactgccatacatcataagaaagagcctgcaaagaaacatta 344  Q
    ||||||| |||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  12956 aaggatccggttgccactgccacacatcataagaaagaggctgcaaagaaacatta 12901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 6727728 - 6727686
Alignment:
Q  302 ccactgccatacatcataagaaagagcctgcaaagaaacatta 344  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  6727728 ccactgccacacatcataagaaagaggctgcaaagaaacatta 6727686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 1468185 - 1468257
Alignment:
Q  302 ccactgccatacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaaga 374  Q
    |||||| || |||||||||||||||| ||||||||||||||||   | ||| | |||||||||||||| ||||    
T  1468185 ccactgtcacacatcataagaaagaggctgcaaagaaacattagcaagtaatagcctacactcctctataaga 1468257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 521
Target Start/End: Complemental strand, 44029021 - 44028918
Alignment:
Q  418 aacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgctccctaaagggaacctgaccacaccaccgatcatgccaaa 517  Q
    ||||| ||||| ||| |||| |||||||| |  |||||  || ||| ||||| ||| |||||||| || | ||| | |||||||||||||||||||||||    
T  44029021 aacatgtctttaaccgttattgatttattcaaggctaaatcaaataacctactaaagcgctccctcaaagcaacatcaccacaccaccgatcatgccaaa 44028922  T
Q  518 aaag 521  Q
    ||||    
T  44028921 aaag 44028918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 2207773 - 2207731
Alignment:
Q  302 ccactgccatacatcataagaaagagcctgcaaagaaacatta 344  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||    
T  2207773 ccactgccacacatcataagaaagaggctgtaaagaaacatta 2207731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 44029159 - 44029082
Alignment:
Q  300 aaccactgccatacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 377  Q
    ||||||||||| |||||| ||||||||| |||||| ||||||| |   | ||| | |||||||||| |||||||||||    
T  44029159 aaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagacagtaataacctacactccgctaaaagatcc 44029082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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