View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_high_14 (Length: 357)
Name: NF14841_high_14
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 13695202 - 13694973
Alignment:
| Q |
11 |
gtgagatgaattaatcatgaaagaaatatga-aatgaattaagttttcagaatggtt-actttctctttgatgatgcatatttgtctcattatagtaaaa |
108 |
Q |
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| T |
13695202 |
gtgatatgaattaatcatgaaagaaatatgacaatgaattaagttttcagaatggtttactttctctttgatgatgcatatttgtctcattatagtaaaa |
13695103 |
T |
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| Q |
109 |
gtcttgcccgtataaatagctatttttcccattaattgatgatttgatgaattatttgattaagcgtattttgtgatatttgaaaatgtgagttaaagaa |
208 |
Q |
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| T |
13695102 |
gtcttgcctgtataaatagctattttttccattaattgatgatttgatgaattatttgactaagcgtattttgtgatatttgaaaatgtgagttaaagaa |
13695003 |
T |
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| Q |
209 |
aaacgataaggttagagatggtttgttata |
238 |
Q |
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| T |
13695002 |
aaacgataaggttagagatagtttgttata |
13694973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 13694966 - 13694896
Alignment:
| Q |
270 |
gatattgtcgacgcttccttgtaatttgaccttttgtgaaattaaatttaatacttttgacaaataaaggt |
340 |
Q |
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| T |
13694966 |
gatactgtcgatgcttccttgtaatttgaccttttgtgaaattagatttaatgcttttgacaaataaaggt |
13694896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 23959927 - 23959974
Alignment:
| Q |
180 |
tgtgatatttgaaaatgtgagttaaagaaaaacgataaggttagagat |
227 |
Q |
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| T |
23959927 |
tgtgatatttgaatgtgtgagttaaacaaaagcgataaggttagagat |
23959974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 20179871 - 20179824
Alignment:
| Q |
180 |
tgtgatatttgaaaatgtgagttaaagaaaaacgataaggttagagat |
227 |
Q |
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| T |
20179871 |
tgtgatatttgaagatgtgacttaaagaaaagcgataaagttagagat |
20179824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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