View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14841_high_2 (Length: 550)

Name: NF14841_high_2
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14841_high_2
NF14841_high_2
[»] chr4 (2 HSPs)
chr4 (301-532)||(55861198-55861429)
chr4 (13-235)||(55860920-55861132)
[»] chr2 (3 HSPs)
chr2 (13-235)||(29273424-29273646)
chr2 (355-532)||(29273149-29273326)
chr2 (299-334)||(29273325-29273360)
[»] chr1 (2 HSPs)
chr1 (302-496)||(16699939-16700134)
chr1 (139-229)||(16700207-16700297)
[»] chr5 (1 HSPs)
chr5 (302-341)||(3820898-3820937)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 301 - 532
Target Start/End: Original strand, 55861198 - 55861429
Alignment:
Q  301 taaccccaccacaaagaaattatggacccgaattgaagtacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctg 400  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55861198 taaccccaccacaaagaaattatggacccgaattgaaggacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctg 55861297  T
Q  401 cacaatccgtatgaacgtcgggaacgcgcgaaaaagccatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatcccc 500  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55861298 cacaatccgtatgaacgtcgggaacgcgcgaaaaagtcatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatcccc 55861397  T
Q  501 aaagaagaacgggccatcaaggagttggatct 532  Q
    ||||||||||||||||||||||||||||||||    
T  55861398 aaagaagaacgggccatcaaggagttggatct 55861429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 55860920 - 55861132
Alignment:
Q  13 acatcatcagcgccacacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctcca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55860920 acatcatcagcgccacacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctcca 55861019  T
Q  113 tggaattaccttcgaatcagaaaatcagaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaacacctcttaaa 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||| ||||||||||||| |||||||||    
T  55861020 tggaattaccgtcgaatcagaaaatcagaataacacaatttatca----------gtgaacccaggaatggattcgaaagatacacaaacccctcttaaa 55861109  T
Q  213 tatccggcgagagacatgcccac 235  Q
    |||||||||||||||||||||||    
T  55861110 tatccggcgagagacatgcccac 55861132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 29273646 - 29273424
Alignment:
Q  13 acatcatcagcgccacacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctcca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29273646 acatcatcagcgccacacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctcca 29273547  T
Q  113 tggaattaccttcgaatcagaaaatcagaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaacacctcttaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29273546 tggaattaccttcgaatcagaaaatcagaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaacacctcttaaa 29273447  T
Q  213 tatccggcgagagacatgcccac 235  Q
    |||||||||||||||||||||||    
T  29273446 tatccggcgagagacatgcccac 29273424  T

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Target: chr2; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 355 - 532
Target Start/End: Complemental strand, 29273326 - 29273149
Alignment:
Q  355 ttcaagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcgaaaaagccatacaaagaagtcttc 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29273326 ttcaagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcgaaaaagccatacaaagaagtcttc 29273227  T
Q  455 ttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatct 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29273226 ttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatct 29273149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 29273360 - 29273325
Alignment:
Q  299 tctaaccccaccacaaagaaattatggacccgaatt 334  Q
    ||||||||||||||||||||||||||||||||||||    
T  29273360 tctaaccccaccacaaagaaattatggacccgaatt 29273325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 496
Target Start/End: Complemental strand, 16700134 - 16699939
Alignment:
Q  302 aaccccaccacaaagaaattatggacccgaattgaagtacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctgc 401  Q
    |||||||||| | ||||||||| | ||||||| |||||||    ||||| || |||||||| ||| ||||||| |||||||||||||||| ||||  |||    
T  16700134 aaccccaccatagagaaattattgtcccgaatcgaagtaccgtcggaaattt-ttcaagtatcggtcccattacctgacaaatccaactacaatccatgc 16700036  T
Q  402 aca--atccgtatgaacgtcgggaacgcgcgaaaaagccatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaat 496  Q
    |||  ||| |||| ||| ||||||||||||||||||||||| ||   |||||||||||| | |||||||||||||||| ||| || | |||||||||    
T  16700035 acacaatctgtattaacatcgggaacgcgcgaaaaagccatccagcaaagtcttcttgaggtagcttttgaattataatacacaatccgacataaat 16699939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 16700297 - 16700207
Alignment:
Q  139 agaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaacacctcttaaatatccggcgagagacat 229  Q
    |||| ||||||||||||||| ||||||| | ||||  ||||||||||||| | || ||||||||| | |||||||||||||||||||||||    
T  16700297 agaacaacacaatttatcagcgaaatgcagagaacaaaggaatggattcgaacgacacacaaacaacgcttaaatatccggcgagagacat 16700207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 3820937 - 3820898
Alignment:
Q  302 aaccccaccacaaagaaattatggacccgaattgaagtac 341  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  3820937 aaccccaccacagagaaattatggacccgaattgaagtac 3820898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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