View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_high_23 (Length: 299)
Name: NF14841_high_23
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 53144257 - 53144540
Alignment:
| Q |
1 |
tggattttggaattcaatttcttgcaataattaatgcgacgcggtcaaaaaacaataagagagctcaacctctgtagcattgtaactgtaaaaatatata |
100 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53144257 |
tggatattggaattcaatttcttgcaataattaatgtgacgctgtcaaaaaacaataagagagctcaacctctgtagcattgtaactgtaaaaaagtata |
53144356 |
T |
|
| Q |
101 |
aatattcgtcatttgatgatacgtcatatatggaccatactatctatctatacactcgtttctattacgacaaag-nnnnnnnntcaaagattccacttt |
199 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
53144357 |
aatattggtcatttgatgatacgtcatgtatggaccatactatctatctatacactcgtttctcttacgccaaagagaaaaaaatcaaagattccacttt |
53144456 |
T |
|
| Q |
200 |
ttgattatatcttctcaaccaaacagtgtgcacactatttaactgttccatgcaattttttctccagcttccaaatgaagcatg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53144457 |
ttgattatatcttctcaaccaaacagtgtgcacactatttaactgttccatgcaattttttctccagcttccaaatgaagcatg |
53144540 |
T |
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