View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_high_25 (Length: 286)
Name: NF14841_high_25
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_high_25 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 32239601 - 32239854
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtcgaaatatgttcaaattaatggcaaggttcttctttttatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239601 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtcgaaatatgttcaaattaatggcaaggttcttctttttatt |
32239700 |
T |
|
| Q |
117 |
catattgtccttgtccatcatcattatttatagcaaaaggtggatagcagaaacaaaattgccactgctaatagccatgggttagttttatttccaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||| ||| |||||||||||||||||| ||||| |
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| T |
32239701 |
catattgtccttgtccatcatcattatttatagcaaaaggtggataacataaacgaaattgccactgctaacagcgatgggttagttttatttcgaattg |
32239800 |
T |
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| Q |
217 |
gaaaaggggatttgaagctatgaatatagtctaaattttattaacagaagttat |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239801 |
gaaaaggggatttgaagctatgaatatagtctaaattttattaacagaagttat |
32239854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 270
Target Start/End: Original strand, 27118008 - 27118230
Alignment:
| Q |
56 |
ctattccttctccgtttcgt-----cgaaatatgttcaaattaatggcaaggttcttctttttattcatattgtccttgtccatcatcat---tatttat |
147 |
Q |
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|||||||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||| | ||| ||||||||||| ||||||| |
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| T |
27118008 |
ctattccttctccgtttcgttccgtcggaatatgttcaaatcaatggcagggttcttctttttattcatatttttcttatccatcatcatgattatttat |
27118107 |
T |
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| Q |
148 |
agcaaaaggtggatagcagaaacaaaattgccactgctaatagccatgggttagttttatttccaattggaaaaggggatttgaagctatgaatatagtc |
247 |
Q |
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||| |||| ||||| || |||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
27118108 |
agcgaaagatggatgacataaacgaaattgccactgttaatagcgatgggttaattttatttccaattggaaaaggggattttaagctatgaatacagtc |
27118207 |
T |
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| Q |
248 |
taaattttattaacagaagttat |
270 |
Q |
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|||| |||||||||||||||||| |
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| T |
27118208 |
taaaatttattaacagaagttat |
27118230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 27117951 - 27117989
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctct |
55 |
Q |
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| T |
27117951 |
atatccaactattcctcttctctccacctgtgattctct |
27117989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 23011140 - 23011272
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtc-----gaaatatgttcaaattaatggcaaggttcttcttt |
111 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
23011140 |
atatccaactatttctcttctctccacctgtgattctctctattccttctccgtttcgtctcgtcggaatatgttcaaattaatggcaaggttcttcttt |
23011239 |
T |
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| Q |
112 |
ttattcatattgtccttgtccatcatcattatt |
144 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
23011240 |
ttattcatattgttcttgtccatcatcattatt |
23011272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 53371810 - 53371680
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtc-----gaaatatgttcaaattaatggcaaggttcttcttt |
111 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
53371810 |
atatccaactatttctcttctctccacctgtgattctctctattccttctctgtttcgtctcgtcggaatatgttcaaattaatggcaaggttcttcttt |
53371711 |
T |
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| Q |
112 |
ttattcatattgtccttgtccatcatcatta |
142 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
53371710 |
ttattcatattgttcttgtccatcatcatta |
53371680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 2929 - 2797
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtc-----gaaatatgttcaaattaatggcaaggttcttcttt |
111 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
2929 |
atatccaactatttctcttctctccacctgtgattctctctattccttctctgtttcgtctcgtcggaatatgttcaaattaatggcaaggttcttcttt |
2830 |
T |
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| Q |
112 |
ttattcatattgtccttgtccatcatcattatt |
144 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
2829 |
ttattcatattgttcttgtccatcatcattatt |
2797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 68 - 258
Target Start/End: Original strand, 7266828 - 7267029
Alignment:
| Q |
68 |
cgtttcgtcgaaatatgttcaaattaatggcaaggttcttctttttattcatattgtccttgtccatcatc---attatttatagcaaaaggtggatagc |
164 |
Q |
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|||| ||||| |||||| |||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||| | |
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| T |
7266828 |
cgttccgtcggaatatgatcaaattaatggcagggttcttctttttcttcatattgttcttgtccatcatcattattatttatagcgaaaggtggatgac |
7266927 |
T |
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| Q |
165 |
agaaacaaaattgccactgctaa--------tagccatgggttagttttatttccaattggaaaaggggatttgaagctatgaatatagtctaaatttta |
256 |
Q |
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| ||||||||||| ||||||||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |
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| T |
7266928 |
ataaacaaaattgtcactgctaatacctctgtagagatgggttaattttatttccaattgaaaaaggggatttgaagctatgaataaagtttaaatttta |
7267027 |
T |
|
| Q |
257 |
tt |
258 |
Q |
| |
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|| |
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|
| T |
7267028 |
tt |
7267029 |
T |
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