View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14841_high_28 (Length: 269)

Name: NF14841_high_28

Description: NF14841

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14841_high_28

[»] chr2 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 171; E-Value: 7e-92

Query Start/End: Original strand, 10 - 253

Target Start/End: Original strand, 4752319 - 4752572

Alignment:

Q	10	aaatttcgaaccgcaagagcctccgctgtactttgatcagacaacctcaaacacctagaacgtatgtctccaacagcaggaccacctataacgcgcgcgc	109	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4752319	aaatttcgaaccgcaagagcctccgctgtactttgatcagacaacctcaaacacctagaacgtatgtctccaacagcaggaccacctataacgcgcgcg-	4752417	T

Q	110	acacacaccacaatcaaccaaatccct-nnnnnnnntatgatcgccgg-----------acactgacacaccaacatggtaataatttgagaaaattaaa	197	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4752418	-cacacaccacaatcaaccaaatccctaaaaaaaaatatgatcgccggacactgacacaacactgacacaccaacatggtaataatttgagaaaattaaa	4752516	T

Q	198	tgaattaattcaacttaatcacatgtgtcggtggatgtcgaacacgtctttgatca	253	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4752517	tgaattaattcaacttaatcacatgtgtcggtgggtgtcgaacacgtctttgatca	4752572	T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 192 - 230

Target Start/End: Original strand, 5776748 - 5776786

Alignment:

Q	192	attaaatgaattaattcaacttaatcacatgtgtcggtg	230	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	5776748	attaaataaattaattcaacttaatcacatgtgtgggtg	5776786	T

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