View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_high_30 (Length: 253)
Name: NF14841_high_30
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_high_30 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 32852768 - 32853013
Alignment:
| Q |
18 |
tatcatgttaaacgggattagatctcactcctaatagctagttcatttgacgagggatgctcatgccggggtaggcttgagatcaattttcacaacatga |
117 |
Q |
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| T |
32852768 |
tatcatgttaaacgggattagatctcactcctaatagctagtttatttgacgagggatgctcatgccggggtaggcttgagatcaattttcacaacatga |
32852867 |
T |
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| Q |
118 |
cttgaatttcaccacgaaaagctaacttattgcaagatgtgtccaaatgcacatatacattgtagatatatc-----tttaagttcttaact-----tct |
207 |
Q |
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| T |
32852868 |
cttgaatttcaccacgaaaagctaattcattggaagatgtgtccaaatacacatatacattgtagatatatccatcttttaagttcttaacttgctatct |
32852967 |
T |
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| Q |
208 |
gatgggtaccaagataccaaccacatcaattttaagaactttatga |
253 |
Q |
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| T |
32852968 |
gatgggtactaagataccaaccacatcagttttaagaactttatga |
32853013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 31733346 - 31733110
Alignment:
| Q |
18 |
tatcatgttaaacgggattagatctcactcctaatagctagttcatttgacgagggatgctcatgccggggtaggcttgaga-------tcaattttcac |
110 |
Q |
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| T |
31733346 |
tatcatgttaaacaggtttagatctcacttctagtagctagttcattagacgagtgatactcatgtcggggtaggcttgagaattgagatcaattctcac |
31733247 |
T |
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| Q |
111 |
aacatgacttgaatttcaccacgaaaagctaacttattgcaagatgtgtccaaatgcacatatacattgtagatatatctttaagttcttaact-----t |
205 |
Q |
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| T |
31733246 |
aacatgacttgaatttaattacgaaaagtta-----------gatgtgtccaaatgcacatatacattgtagatatatctttaaattcttaacttgctat |
31733158 |
T |
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| Q |
206 |
ctgatgggtaccaagataccaaccacatcaattttaagaactttatga |
253 |
Q |
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| T |
31733157 |
ctgatgggtactaagataccaaccacattacttttaagaattttatga |
31733110 |
T |
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