View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_high_34 (Length: 239)
Name: NF14841_high_34
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 4592395 - 4592224
Alignment:
| Q |
60 |
cgtccgatctttgacctatggccgagactaccacagtaggaaatgctgacagcaaatcatgacagggcatgttaatttttgttatcgatttatgattgca |
159 |
Q |
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| T |
4592395 |
cgtccgatctttgacatatggccgagactaccacagtaggaaatgctgacagcaaatcatgacagggcatgttaatttttgttatcgatttatgattgca |
4592296 |
T |
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| Q |
160 |
ttgctttagcataattggtctctagagtaaaacattggtctagattaatctcattctacatattcttcgaca |
231 |
Q |
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| T |
4592295 |
ttgctttagcataattggtctctagagtaaaacattggtctagattaatctcattctacatattctttgaca |
4592224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4592583 - 4592527
Alignment:
| Q |
1 |
actttggtaggaaactagtttaatattaaaacacatcaacttggtctgctacatctg |
57 |
Q |
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| T |
4592583 |
actttggtaggaaactagtttaatataaaaacacatcaacttggtctgctacatctg |
4592527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 4584575 - 4584525
Alignment:
| Q |
76 |
tatggccgagactaccacagtaggaaatgctgacagcaaatcatgacaggg |
126 |
Q |
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| T |
4584575 |
tatggccgagattacaacagtaggaaatgctgactgcaaatcatgacaggg |
4584525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 4600740 - 4600658
Alignment:
| Q |
151 |
atgattgcatt-gctttagcataattggtctctagagtaaaacattggtctaga-ttaatctcattctacatattcttcgaca |
231 |
Q |
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| T |
4600740 |
atgattgcatttgttttagcataattggtctcttgtgtaaaacattagtttacatttcatctcattctacatattctttgaca |
4600658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 4584525 - 4584480
Alignment:
| Q |
186 |
gtaaaacattggtctagattaatctcattctacatattcttcgaca |
231 |
Q |
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| T |
4584525 |
gtaaaatatttgtctagattaatctcattctacatattctttgaca |
4584480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 4573293 - 4573253
Alignment:
| Q |
191 |
acattggtctagattaatctcattctacatattcttcgaca |
231 |
Q |
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| T |
4573293 |
acattggtctagattaatctcatcctacatattctttgaca |
4573253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 4584787 - 4584743
Alignment:
| Q |
13 |
aactagtttaatattaaaacacatcaacttggtctgctacatctg |
57 |
Q |
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| T |
4584787 |
aactagtttaatacgaaaacgcatcaacttcgtctgctacatctg |
4584743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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