View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_high_35 (Length: 236)
Name: NF14841_high_35
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 21019649 - 21019881
Alignment:
| Q |
1 |
ttccattttctgtaaacggattgtctattctaaaacacaaatactctttgaaagtgtgaaagagaggagataaggaataaaagtaataattgaatgcaga |
100 |
Q |
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| T |
21019649 |
ttccattttctgtaaacggattatctattctaaaacacaaatactctttgaaagtgtgaaagagaggagataaggaataaaagtaataattgaatgcaga |
21019748 |
T |
|
| Q |
101 |
aaatttatgcacaatgatagatatgagacactctttcccc---------------atagatatatgatttacaaatggacatgaattaacattgatcggt |
185 |
Q |
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| T |
21019749 |
aaatttatgcacaatgagagatatgagacactctttccccatagactaagccttgatagatatatgatttacaaatggacatgaattaacattgatcggt |
21019848 |
T |
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| Q |
186 |
gcgttgctgcataatgaaattggaggtctaagt |
218 |
Q |
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| T |
21019849 |
acgttgctgcataatgaaattggaggcctaagt |
21019881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 26395138 - 26394906
Alignment:
| Q |
1 |
ttccattttctgtaaacggattgtctattctaaaacacaaatactctttgaaagtgtgaaagagaggagataaggaataaaagtaataattgaatgcaga |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
26395138 |
ttccattttctgtaaacagattgtctattctaaaacacaaatactctttgaaagtgtgaaagagaggagacaaggaataaaagtaataattgaatgtaga |
26395039 |
T |
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| Q |
101 |
aaatttatgcacaatgatagatatgagacactctttcccca---------------tagatatatgatttacaaatggacatgaattaacattgatcggt |
185 |
Q |
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| T |
26395038 |
atatttatgcacaatgagagatatgagacactctttccccatagactaagccttgatagatatatgatttacaaatggacatgaattaacattgatcggt |
26394939 |
T |
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| Q |
186 |
gcgttgctgcataatgaaattggaggtctaagt |
218 |
Q |
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| T |
26394938 |
gcgttgctgcataatgaaattggaggcctaagt |
26394906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 26394876 - 26394644
Alignment:
| Q |
1 |
ttccattttctgtaaacggattgtctattctaaaacacaaatactctttgaaagtgtgaaagagaggagataaggaataaaagtaataattgaatgcaga |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |
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| T |
26394876 |
ttccattttctgtaaatggattatctactctaaaacacaaatactctttgaaagtgtgaaagagaggagacaaggaatacaagtaataattgaatgcata |
26394777 |
T |
|
| Q |
101 |
aaatttatgcacaatgatagatatgagacactctttcccca---------------tagatatatgatttacaaatggacatgaattaacattgatcggt |
185 |
Q |
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| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26394776 |
atatttatgcacaatgagagatatgagacactctttccccatagactaagccttgatagatatatgatttacaaattgacatgaattaacattgatcggt |
26394677 |
T |
|
| Q |
186 |
gcgttgctgcataatgaaattggaggtctaagt |
218 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
26394676 |
gcgttgctgcataatgaaattggaggcctaagt |
26394644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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