View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14841_high_43 (Length: 210)
Name: NF14841_high_43
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_high_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 45217192 - 45217020
Alignment:
| Q |
23 |
aaagggagcctaccatttttgttgtattgtatgcagccttaccctatttttatatttgtgccaaggatccccttaatatcattttctattaaggttcaaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45217192 |
aaagggagcctaccatttttgttgtattgtatgcagtcttaccctatttttacctttgcgccaaggatccccttaatatcattttctattaaggttcaaa |
45217093 |
T |
|
| Q |
123 |
ataaattctgctctcagaattagtatatctcatgatttgtggattattgcagtttctaattttccattctgtg |
195 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45217092 |
ataaattctgctctcagaattggtatatctcatgatttgtggattattgcagtttctaattttccattctgtg |
45217020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 22324995 - 22324955
Alignment:
| Q |
34 |
accatttttgttgtattgtatgcagccttaccctattttta |
74 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
22324995 |
accatttttggtgtattgtatgcagccttaccctgttttta |
22324955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 35005226 - 35005187
Alignment:
| Q |
34 |
accatttttgttgtattgtatgcagccttaccctattttt |
73 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
35005226 |
accatttttggtgtattgtatgcagccttaccctgttttt |
35005187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 23914373 - 23914423
Alignment:
| Q |
24 |
aagggagcctaccatttttgttgtattgtatgcagccttaccctattttta |
74 |
Q |
| |
|
|||||| || ||||| |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
23914373 |
aagggatcccaccatatttgatgtattgtatgcagtcttaccctattttta |
23914423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 45139533 - 45139566
Alignment:
| Q |
34 |
accatttttgttgtattgtatgcagccttaccct |
67 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
45139533 |
accatttttggtgtattgtatgcagccttaccct |
45139566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 31831293 - 31831261
Alignment:
| Q |
40 |
tttgttgtattgtatgcagccttaccctatttt |
72 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
31831293 |
tttggtgtattgtatgcagccttaccctatttt |
31831261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 45948904 - 45948932
Alignment:
| Q |
45 |
tgtattgtatgcagccttaccctattttt |
73 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45948904 |
tgtattgtatgcagccttaccctattttt |
45948932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University