View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_10 (Length: 399)
Name: NF14841_low_10
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 6342474 - 6342729
Alignment:
| Q |
6 |
aaaaatatatatttgtgtgagtttcattttgatgcattgtaaatgaatcacaagcatccatatgttcgactttataagtggttgtgattaaaacttataa |
105 |
Q |
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| T |
6342474 |
aaaaatatatatttgtgtgagtttcattttgatgcattgtcaatgaatcacaagcatccatatgttcgactttataagtggttgtgattaaaacttaaaa |
6342573 |
T |
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| Q |
106 |
tcaaagaatatatatgattagacagttttgattaattgacagtgaaaaacatttttacaaccgacaatgtatatttcctctttctttttgggtcactatg |
205 |
Q |
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| T |
6342574 |
tcaaagaatatatatgattagacagttttgattaattgacagcgaaaaacatttttaccaccgacaatgtatatttcctctttctttttgggtcactatg |
6342673 |
T |
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| Q |
206 |
cattgtaatcaaattatgcgtatttgcgcggtgagtgttccacttttactacaaaa |
261 |
Q |
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| T |
6342674 |
cattgtaatcaaattatgcgtatttgcgcggtgagtgttccacttttactacaaaa |
6342729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 261 - 394
Target Start/End: Original strand, 6347081 - 6347214
Alignment:
| Q |
261 |
atcacgacaattttcagcgttcaactagaagcttgattttgtagcagtggtaagcggtattgataaatagggtgagggacacatggttgcacgattcgac |
360 |
Q |
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| T |
6347081 |
atcacgacaattttcagcgttcaactagaagcttgattttgtagcagtggtaagcggtattgataaatagcgcgagggacacatggttgcacgattcgac |
6347180 |
T |
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| Q |
361 |
tctagggagttttttaaaaaatattcattttctt |
394 |
Q |
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| T |
6347181 |
tctagggagttttttaaaaaatattcattttctt |
6347214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 37963033 - 37963121
Alignment:
| Q |
304 |
gcagtggtaagcggtatt-gataaatagggtgagggacacatggttgcacgattcgactctagggagttttttaaaaaatattcattttc |
392 |
Q |
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| T |
37963033 |
gcagtggtaagaggtatttgataaatagcgcaagggacacatcgttgcacgattcgcctcta-agagtttttaaaataatattcattttc |
37963121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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