View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_12 (Length: 376)
Name: NF14841_low_12
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 3924422 - 3924071
Alignment:
| Q |
1 |
gataaggtaataaagctaataaagttatttgtacaatgcaggttaagaaaatggcaaataatgagaatgcaccaaaggagactagtgttaacaataatgc |
100 |
Q |
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| T |
3924422 |
gataaggtaataaagctaa--aagttatttgtacaatgcaggttaagaaaatggcaaataatgagaatgcaccaaaggagactagtgttaacaataatgc |
3924325 |
T |
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| Q |
101 |
tgcatttgaagctgataagcttacaaggagatatgaccttgttgaagaaatggagttcttatttgtaagggttgtaaaggtcatagactttcccaatatc |
200 |
Q |
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| T |
3924324 |
tgcatttgaagctgataagcttacaaggagatatgaccttgttgaagaaatggaattcttatttgtaagggttgtaaaggtcatagactttcccaatatc |
3924225 |
T |
|
| Q |
201 |
cataatctctatgtagaggtagtacttggaaacgtaaaagcaacaacatttttcttagaaaccagcaactcatcattgaaccaagtgtttgcttttgata |
300 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3924224 |
cataatctctatgtagaggtggtacttggaaacgcaaaagcaacaacatttttcttagaaaccagcaactcatcattgaaccaagtgtttgcttttgata |
3924125 |
T |
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| Q |
301 |
atggaaaaaatagctctagcaacgtagatgttttcttgaaagacaggacgtcag |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3924124 |
atggaaaaaatagctctagcaacgtagatgttttcttgaaagacaggacgtcag |
3924071 |
T |
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