View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_13 (Length: 369)
Name: NF14841_low_13
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 7338414 - 7338185
Alignment:
| Q |
21 |
agaaaatataattaacatttcacaaatttaagatattaaattgttcaatctttataatttgatgaccgtatcttttttctttctctttagcttaaccaat |
120 |
Q |
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| T |
7338414 |
agaaaatataattaacatttcacaaatttaagatattaaattgttcaatctttataatttgatgaccatatcttttttctttttctttagcttaaccaat |
7338315 |
T |
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| Q |
121 |
cactcaggtttgaacttgagtttagacatataatagagtcagagttcttaagaaatgtttgtcgttcgagaaatcttgcaaattttgtagaattaaattt |
220 |
Q |
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| T |
7338314 |
cactcaggtttgaacttgagtttagacatataatagagtcagagttcttaaaaaatgtttgttgttcgagaaatcttgcaaattttgtagaatt-aattt |
7338216 |
T |
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| Q |
221 |
ataggacattctgcgtaaggaagctcatccg |
251 |
Q |
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| T |
7338215 |
ataggatattctgtgtaaggaagctcatccg |
7338185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 7337525 - 7337468
Alignment:
| Q |
296 |
ggttcattactggtttaggtgaaccatacaaaaggatacgacaaaatggggagaaaaa |
353 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7337525 |
ggttcattactggtttagatgaaccatacaaaaggatacgacaaaatggggagaaaaa |
7337468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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