View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14841_low_18 (Length: 336)
Name: NF14841_low_18
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_18 |
 | |
|
| [»] scaffold0025 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 13111223 - 13110917
Alignment:
| Q |
10 |
gaagaatattacatgctgcaattttaaaaatgatgtaagacaatagtgattggatcaatcacaacaataagcagtaacgcaaacatcaattcgccacaac |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13111223 |
gaagaatattatatgctgcaattttaaaaatgatgtaagacaatagtgattggatcaatcacaacaataagcagtaacgcaaacattaattcgccacaac |
13111124 |
T |
|
| Q |
110 |
tatgaacagcttgaaaacaaacaaagttacacaacttagtctaaaattcaacttccaaattgttacacatttactaattatcaaaccaaactaggaaatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13111123 |
tatgaacagcttgaaaacaaacaaagtt--acaacttagtctaaaattcaacttccaaattgttacacatttactaattatcaaaccaaactaggaaatt |
13111026 |
T |
|
| Q |
210 |
attaatgtataccagctagagttaaaccttttgaaacaccaaacacacattattatgttttttcggccactgaaccataaatttaacactacatttttaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13111025 |
attaatgtataccagctagagttaaaccttttgaaacaccaa--acacattattatgttttttcggccactgaaccataaatttaacactacatttttaa |
13110928 |
T |
|
| Q |
310 |
caacatataac |
320 |
Q |
| |
|
||||||||||| |
|
|
| T |
13110927 |
caacatataac |
13110917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 13053801 - 13053731
Alignment:
| Q |
70 |
acaacaataagcagtaacgcaaacatcaattcgccacaactatgaacagcttgaaaacaaacaaagttaca |
140 |
Q |
| |
|
|||| |||||||| |||| |||||||||||| ||||||| || ||| | ||| |||| ||||||||||||| |
|
|
| T |
13053801 |
acaataataagcaataacacaaacatcaatttgccacaattacgaagaactttaaaataaacaaagttaca |
13053731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 70 - 320
Target Start/End: Original strand, 151865 - 152111
Alignment:
| Q |
70 |
acaacaataagcagtaacgcaaacatcaattcgccacaactatgaacagcttgaaaacaaacaaagttacacaacttagtctaaaattcaacttccaaat |
169 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||| |
|
|
| T |
151865 |
acaacaataaggagtaacgcaaacatcaattcaccacaactatgaacagcttgaaaacaaacaaagttaca--acatagtctaaaatcaaaattccaaat |
151962 |
T |
|
| Q |
170 |
tgttacacatttactaattatcaaaccaaactaggaaattattaatgtataccagctagagttaaaccttttgaaacaccaaacacacattattatgttt |
269 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||| |||| | |||| |||||||||| |||| | |||||||||||| ||||||||||| |||| |
|
|
| T |
151963 |
tgttacacatttactaattaccaaaccagactaggaaatcattagtttatagcagctagagtaaaacatgttgaaacaccaa--acacattattaagttt |
152060 |
T |
|
| Q |
270 |
tttcggccactgaaccataaatttaacactacatttttaacaacatataac |
320 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
152061 |
tttcggccactggtccataaatttaacactacatttttaacaacatataac |
152111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 150934 - 150985
Alignment:
| Q |
10 |
gaagaatattacatgctgcaattttaaaaatgatgtaagacaatagtgattg |
61 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
150934 |
gaagaatattatatgctgcagttttaaaaatgatgtaacacaatagtgattg |
150985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 70 - 319
Target Start/End: Complemental strand, 33982280 - 33982036
Alignment:
| Q |
70 |
acaacaataagcagtaacgcaaacatcaattcgccacaactatgaacagcttgaaaacaaacaaagttacacaacttagtctaaaattcaacttccaaat |
169 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| ||||||||| ||| | |||||||| |||| |||||| || ||| |||| || |||| |||||| |
|
|
| T |
33982280 |
acaacaataagcagtaacacaaacaccaattcaccacaactaggaaaaacttgaaaataaactt-gttaca--acatagcctaagatccaacatccaaac |
33982184 |
T |
|
| Q |
170 |
tgttacacatttactaattatcaaaccaaactaggaaattattaatgtataccagctagagttaaaccttttgaaacaccaaacacacattattatgttt |
269 |
Q |
| |
|
|||||||||||||||| ||| ||||| | |||||||| | ||||| |||||||| |||| |||| | |||||||||||| |||||||| || |||| |
|
|
| T |
33982183 |
tgttacacatttactacttagcaaacaagactaggaagtcattaactaataccagcaagag-taaatcagttgaaacaccaa--acacattactaagttt |
33982087 |
T |
|
| Q |
270 |
ttt-cggccactgaaccataaatttaacactacatttttaacaacatataa |
319 |
Q |
| |
|
||| ||| |||| ||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
33982086 |
tttccggtcactcaacaagaaatttaatcctacatttttaacaacatataa |
33982036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 320
Target Start/End: Original strand, 42822577 - 42822729
Alignment:
| Q |
166 |
aaattgttacacatttactaattatcaaaccaaactaggaaattattaatgtat-accagctagagttaaaccttttgaaacaccaaacacacattatta |
264 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| | | |||||| | ||||| ||| |||||| ||||| |||| | || |||||||||||||| ||| || |
|
|
| T |
42822577 |
aaattgttacacatttactacttaacaaacaagattaggaagtcattaac-tatcaccagccagagtaaaacatgttcaaacaccaaacaca--ttacta |
42822673 |
T |
|
| Q |
265 |
tgttttttcggccactgaaccataaatttaacactacatttttaacaacatataac |
320 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
42822674 |
aatttttccggccactgaacaagaaatttaacactacatttttaacaacatataac |
42822729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University