View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_19 (Length: 335)
Name: NF14841_low_19
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 35341551 - 35341230
Alignment:
| Q |
11 |
catcatcacgtcattattgttgtggataatcctctgaatcaagggaattcataaattgaatgtctaaagattttgagttaagttgtagtgtccaacaaat |
110 |
Q |
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| T |
35341551 |
catcatcacgtcattattgtgttggataatcctctgaattgaaagaattcataaattgaatgtctaaaggttttgagttaagttgtagtgtctaacaaag |
35341452 |
T |
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| Q |
111 |
aatccaaatgtatgtaatattttggttcaaatgtggataatccttcgaatttcactcttgaaccaaaagtttgagagtttttcgcccttaa---cccaaa |
207 |
Q |
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| T |
35341451 |
aatccaaatgtatgaaatattttggttcaaatgtggataatcctttgaatttcactcttgacccaaaagtttgagagtttttcgcccttgacttcttgag |
35341352 |
T |
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| Q |
208 |
agtatagtgttataagaatttataatatccccaaaattgaatatgatccaagcaaaattattactctcgtagccgcgtcattatggtttccaaagaatat |
307 |
Q |
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| T |
35341351 |
tgtatagtgttataagaatttataatatccccaaaattcaatatgatccaagcaaaattattactctcgtagccgcgtcat--tggcttgcaaagaatat |
35341254 |
T |
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| Q |
308 |
catcaaatgacaacagggcgttcc |
331 |
Q |
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| T |
35341253 |
catcaaatgacaacatgtcgttcc |
35341230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 35346867 - 35346778
Alignment:
| Q |
11 |
catcatcacgtcattattgttgtggataatcctctgaatcaagggaattcataaattgaatgtctaaagattttgagttaagttgtagtgtc |
102 |
Q |
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| T |
35346867 |
catcgtcacgtcattattgttgcggataatcctctgaattgagggaattcataagtcgaatgtctaaaga--ttaagttaagttgtattgtc |
35346778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 35346641 - 35346594
Alignment:
| Q |
230 |
taatatccccaaaattgaatatgatccaagcaaaattattactctcgt |
277 |
Q |
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| T |
35346641 |
taatatcaccaaaattaaatatgatccaagcaaaattattactctcgt |
35346594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 322
Target Start/End: Complemental strand, 35372167 - 35372077
Alignment:
| Q |
230 |
taatatccccaaaa-ttgaatatgatccaagcaaaattattactctcgtagccgcgtcattatggtttccaaagaatatcatcaaatgacaaca |
322 |
Q |
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| T |
35372167 |
taatatcccaaaaagttcaacatgatccaagcaaaattattactctcgccgccgcgtgat--tggcttccaaagaat-tcatcaaatgacaaca |
35372077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 35351887 - 35351759
Alignment:
| Q |
147 |
ataatccttcgaatttcactcttgaaccaaaagtttgagagtttttcgcccttaacccaaaagtatagtgttataagaatttataatatccccaaaattg |
246 |
Q |
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|||||||| |||| | ||||||||| ||| |||||||||||||||| ||||| | | | |||||||||| ||| || ||||||||| ||||| | |
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| T |
35351887 |
ataatcctccgaactccactcttgacccagaagtttgagagtttttgtcccttga---atatgtatagtgttttaaaaagatataatatctacaaaaata |
35351791 |
T |
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| Q |
247 |
aa-tatgatccaagcaaaattattactctcgt |
277 |
Q |
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| T |
35351790 |
aaatatgatccaagcaaaattattactctcgt |
35351759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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