View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_2 (Length: 550)
Name: NF14841_low_2
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 301 - 532
Target Start/End: Original strand, 55861198 - 55861429
Alignment:
| Q |
301 |
taaccccaccacaaagaaattatggacccgaattgaagtacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55861198 |
taaccccaccacaaagaaattatggacccgaattgaaggacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctg |
55861297 |
T |
|
| Q |
401 |
cacaatccgtatgaacgtcgggaacgcgcgaaaaagccatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatcccc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55861298 |
cacaatccgtatgaacgtcgggaacgcgcgaaaaagtcatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaatcccc |
55861397 |
T |
|
| Q |
501 |
aaagaagaacgggccatcaaggagttggatct |
532 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
55861398 |
aaagaagaacgggccatcaaggagttggatct |
55861429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 55860920 - 55861132
Alignment:
| Q |
13 |
acatcatcagcgccacacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctcca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55860920 |
acatcatcagcgccacacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctcca |
55861019 |
T |
|
| Q |
113 |
tggaattaccttcgaatcagaaaatcagaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaacacctcttaaa |
212 |
Q |
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| T |
55861020 |
tggaattaccgtcgaatcagaaaatcagaataacacaatttatca----------gtgaacccaggaatggattcgaaagatacacaaacccctcttaaa |
55861109 |
T |
|
| Q |
213 |
tatccggcgagagacatgcccac |
235 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
55861110 |
tatccggcgagagacatgcccac |
55861132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 29273646 - 29273424
Alignment:
| Q |
13 |
acatcatcagcgccacacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctcca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29273646 |
acatcatcagcgccacacagaacactatcacgacaaaaccgcaatcagacaccaattgacaaaatcaaaagaaataattcaaacctaaaccccacctcca |
29273547 |
T |
|
| Q |
113 |
tggaattaccttcgaatcagaaaatcagaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaacacctcttaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29273546 |
tggaattaccttcgaatcagaaaatcagaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaacacctcttaaa |
29273447 |
T |
|
| Q |
213 |
tatccggcgagagacatgcccac |
235 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
29273446 |
tatccggcgagagacatgcccac |
29273424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 355 - 532
Target Start/End: Complemental strand, 29273326 - 29273149
Alignment:
| Q |
355 |
ttcaagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcgaaaaagccatacaaagaagtcttc |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29273326 |
ttcaagtaccggccccattatctgacaaatccaactaaaatctctgcacaatccgtatgaacgtcgggaacgcgcgaaaaagccatacaaagaagtcttc |
29273227 |
T |
|
| Q |
455 |
ttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatct |
532 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29273226 |
ttgaagcagcttttgaattataacacagaaactgacataaatccccaaagaagaacgggccatcaaggagttggatct |
29273149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 29273360 - 29273325
Alignment:
| Q |
299 |
tctaaccccaccacaaagaaattatggacccgaatt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
29273360 |
tctaaccccaccacaaagaaattatggacccgaatt |
29273325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 496
Target Start/End: Complemental strand, 16700134 - 16699939
Alignment:
| Q |
302 |
aaccccaccacaaagaaattatggacccgaattgaagtacaactggaaaattcttcaagtaccggccccattatctgacaaatccaactaaaatctctgc |
401 |
Q |
| |
|
|||||||||| | ||||||||| | ||||||| ||||||| ||||| || |||||||| ||| ||||||| |||||||||||||||| |||| ||| |
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| T |
16700134 |
aaccccaccatagagaaattattgtcccgaatcgaagtaccgtcggaaattt-ttcaagtatcggtcccattacctgacaaatccaactacaatccatgc |
16700036 |
T |
|
| Q |
402 |
aca--atccgtatgaacgtcgggaacgcgcgaaaaagccatacaaagaagtcttcttgaagcagcttttgaattataacacagaaactgacataaat |
496 |
Q |
| |
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||| ||| |||| ||| ||||||||||||||||||||||| || |||||||||||| | |||||||||||||||| ||| || | ||||||||| |
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| T |
16700035 |
acacaatctgtattaacatcgggaacgcgcgaaaaagccatccagcaaagtcttcttgaggtagcttttgaattataatacacaatccgacataaat |
16699939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 16700297 - 16700207
Alignment:
| Q |
139 |
agaataacacaatttatcagtgaaatgcggtgaacccaggaatggattcggaagatacacaaacacctcttaaatatccggcgagagacat |
229 |
Q |
| |
|
|||| ||||||||||||||| ||||||| | |||| ||||||||||||| | || ||||||||| | ||||||||||||||||||||||| |
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| T |
16700297 |
agaacaacacaatttatcagcgaaatgcagagaacaaaggaatggattcgaacgacacacaaacaacgcttaaatatccggcgagagacat |
16700207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 3820937 - 3820898
Alignment:
| Q |
302 |
aaccccaccacaaagaaattatggacccgaattgaagtac |
341 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
3820937 |
aaccccaccacagagaaattatggacccgaattgaagtac |
3820898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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