View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14841_low_20 (Length: 329)

Name: NF14841_low_20
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14841_low_20
NF14841_low_20
[»] chr2 (18 HSPs)
chr2 (13-259)||(35341010-35341261)
chr2 (42-255)||(35355993-35356201)
chr2 (40-255)||(35374621-35374827)
chr2 (31-242)||(35335863-35336068)
chr2 (40-258)||(35351427-35351645)
chr2 (120-242)||(35346378-35346498)
chr2 (252-314)||(35340903-35340965)
chr2 (86-208)||(35343142-35343258)
chr2 (86-208)||(35368516-35368632)
chr2 (144-255)||(35364657-35364766)
chr2 (86-255)||(35347814-35347983)
chr2 (120-255)||(35371834-35371967)
chr2 (260-306)||(35346257-35346303)
chr2 (252-295)||(35348024-35348067)
chr2 (257-295)||(35355909-35355947)
chr2 (257-295)||(35371752-35371790)
chr2 (257-295)||(35374536-35374574)
chr2 (258-306)||(35343352-35343399)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 35341261 - 35341010
Alignment:
Q  13 aagaatatcatcaaatgacaacatgtcgttccactttctacattcaacactttatatgttctacaaccattaagcatccactcaaacattctattttgtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35341261 aagaatatcatcaaatgacaacatgtcgttccactttctacattcaacactttatatgttctacaaccattaagcatccactcaaacattctattttgtc 35341162  T
Q  113 aatattaattcttgaatctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatccc-----attacac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  35341161 aatattaattcttgaatctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatcccattatattacac 35341062  T
Q  208 aagcaagcaattagcgatgcacacacctgaagcaatattacacacttcctgt 259  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35341061 aagcaagcaatgagcgatgcacacacctgaagcaatattacacacttcctgt 35341010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 35356201 - 35355993
Alignment:
Q  42 tccactttctacattcaacactttatatgttctacaaccattaagcatccactcaaacattctattttgtcaatattaattcttgaatctatgctgcttc 141  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    |||||||| |||  ||||||      
T  35356201 tccactttctacatccaacactttatatgttctacatccattaagcatccactcaaacattctattttgtcaat----attcttgattcttagctgctat 35356106  T
Q  142 ttccaacgtgtatgctgaat-tgtaaagacaattttgccaatgtggctgcacaagatcccattacacaagcaagcaattagcgatgcacacacctgaagc 240  Q
    |||||||||||| ||||||| |||||||||||  ||||||||||||||||||||||| | |||||||| ||| ||| | ||  |||| ||||||| ||||    
T  35356105 ttccaacgtgtaagctgaatgtgtaaagacaa--ttgccaatgtggctgcacaagattctattacacatgcaggcactgaggtatgctcacaccttaagc 35356008  T
Q  241 aatattacacacttc 255  Q
    ||   ||||||||||    
T  35356007 aaacatacacacttc 35355993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 40 - 255
Target Start/End: Complemental strand, 35374827 - 35374621
Alignment:
Q  40 gttccactttctacattcaacactttatatgttctacaaccattaagcatccactcaaacattctattttgtcaatattaattcttgaatctatgctgct 139  Q
    |||||||| ||||||| ||||||||||||||| |  ||||||||  ||||||||||||||||||||||||||||||    |||||||| |||  ||||||    
T  35374827 gttccactatctacatccaacactttatatgtcc--caaccattgtgcatccactcaaacattctattttgtcaat----attcttgattcttagctgct 35374734  T
Q  140 tcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatcccattacacaagcaagcaattagcgatgcacacacctgaag 239  Q
      ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| | |||||||| ||| ||| | ||  |||| ||||||| |||    
T  35374733 atttccaacgtgtatgctgaa-tgtaaagacaa--ttgccaatgtggctgcacaagattctattacacatgcaggcactgaggtatgctcacaccttaag 35374637  T
Q  240 caatattacacacttc 255  Q
    |||   ||||||||||    
T  35374636 caaacatacacacttc 35374621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 242
Target Start/End: Complemental strand, 35336068 - 35335863
Alignment:
Q  31 caacatgtcgttccactttctacattcaacactttatatgttctacaaccat--taagcatccactcaaacattctattttgtcaatattaattcttgaa 128  Q
    |||| ||||||||||||||||||||  ||||||||||||||||  |||||||  || ||||||||||||||||| ||||||||||||    ||||||||     
T  35336068 caacttgtcgttccactttctacatcaaacactttatatgttc-ccaaccattatatgcatccactcaaacattttattttgtcaat----attcttgat 35335974  T
Q  129 tctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatcccattacacaagcaagcaattagcgatgca 228  Q
    ||| |||| ||| |||||||||||| | ||||||||||||||||  |||||||||||||| |||||||| |||||||||| ||| |||   ||| ||||     
T  35335973 tctttgcttctt-ttccaacgtgtaagttgaattgtaaagacaa--ttgccaatgtggctacacaagatgccattacacatgcaggcaccgagccatgct 35335877  T
Q  229 cacacctgaagcaa 242  Q
    ||||||| ||||||    
T  35335876 cacaccttaagcaa 35335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 35351645 - 35351427
Alignment:
Q  40 gttccactttctacattcaacactttatatgttctacaaccattaa--gcatccactcaaacattctattttgtcaatatta---attcttgaatctatg 134  Q
    |||||||||||||| | |||||||||| ||||||  |||| ||||   |||||||||||||||||| ||||| ||||||||    |||||| ||| |  |    
T  35351645 gttccactttctacttccaacactttaaatgttcc-caactattatatgcatccactcaaacattcgattttttcaatattcttgattctttaattt--g 35351549  T
Q  135 ctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatcccattacacaagcaagcaattagcgatgcacacacc 234  Q
    ||||||||||||||||| ||||||| || |||| ||||||  ||||||||||||||||||||| |||||||||| || ||||  |||| |||| ||||||    
T  35351548 ctgcttcttccaacgtgcatgctgacttataaaaacaatt--gccaatgtggctgcacaagattccattacacatgctagcacgtagccatgctcacacc 35351451  T
Q  235 tgaagcaatattacacacttcctg 258  Q
    |  |||||   |||||||||||||    
T  35351450 tttagcaaagatacacacttcctg 35351427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 35346498 - 35346378
Alignment:
Q  120 attcttgaatctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatcccattacacaagcaagcaatt 219  Q
    |||||||| |||||||||| | |||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| |||| ||| |||       
T  35346498 attcttgattctatgctgcattttccaacgtgtaagctgaattgtaaagacaa--ttgccaatgtggctgcacaagatcccattgcacatgcaggcatcg 35346401  T
Q  220 agcgatgcacacacctgaagcaa 242  Q
    ||| |||| ||||||| ||||||    
T  35346400 agccatgctcacaccttaagcaa 35346378  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 35340965 - 35340903
Alignment:
Q  252 cttcctgttatatataacacacaaactctccaatactaactcaactcacacaacttcttgtgt 314  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35340965 cttcttgttatatatatcacacaaactctccaatactaactcaactcacacaacttcttgtgt 35340903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 35343142 - 35343258
Alignment:
Q  86 gcatccactcaaacattctattttgtcaatattaattcttgaatctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtg 185  Q
    ||||||||||||||||||||||||||||||    |||||||| ||| |||||||  ||||||| | || ||||||||||||||||||  |||||||||||    
T  35343142 gcatccactcaaacattctattttgtcaat----attcttgattctttgctgctatttccaacatttaagctgaattgtaaagacaa--ttgccaatgtg 35343235  T
Q  186 gctgcacaagatcccattacaca 208  Q
    ||||| ||| || ||||||||||    
T  35343236 gctgcccaatatgccattacaca 35343258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 35368632 - 35368516
Alignment:
Q  86 gcatccactcaaacattctattttgtcaatattaattcttgaatctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtg 185  Q
    ||||||||||||||||||||||||||||||    |||||||| ||| |||||||  ||||||| | || ||||||||||||||||||  |||||||||||    
T  35368632 gcatccactcaaacattctattttgtcaat----attcttgattctttgctgctatttccaacatttaagctgaattgtaaagacaa--ttgccaatgtg 35368539  T
Q  186 gctgcacaagatcccattacaca 208  Q
    ||||| ||| || ||||||||||    
T  35368538 gctgcccaatatgccattacaca 35368516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 255
Target Start/End: Complemental strand, 35364766 - 35364657
Alignment:
Q  144 ccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatcccattacacaagcaagcaattagcgatgcacacacctgaagcaat 243  Q
    ||||| |||| |||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||  ||| |||| ||||||| ||||||     
T  35364766 ccaacatgtacgctgaattgtaaagacaaat--gccaatgtggctgcacaagatcccattacacatgcaagcaaggagccatgctcacaccttaagcaaa 35364669  T
Q  244 attacacacttc 255  Q
      ||||||||||    
T  35364668 catacacacttc 35364657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 35347814 - 35347983
Alignment:
Q  86 gcatccactcaaacattctattttgtcaatattaattcttgaatctatgctgcttcttcca-acgtgtat----gctgaattgtaaagacaattttgcca 180  Q
    |||||||||||||||||||||||||||||||||    ||||| ||| |||| ||| ||||| ||||||||    ||||||||||| ||||||||  ||||    
T  35347814 gcatccactcaaacattctattttgtcaatatt----cttgagtctttgcttctt-ttccatacgtgtatatatgctgaattgtagagacaatt--gcca 35347906  T
Q  181 atgtggctgcacaagatccc--attacacaagcaagcaattagcgatgcacacacctgaagcaatattacacacttc 255  Q
    |||||||||||||||| |||  |||||||| ||| |||  |||| |||| || |||| ||||||  |||||||||||    
T  35347907 atgtggctgcacaagaccccatattacacatgcaggcacgtagccatgctcataccttaagcaaacttacacacttc 35347983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 255
Target Start/End: Complemental strand, 35371967 - 35371834
Alignment:
Q  120 attcttgaatctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtggctgcacaagatcccattacacaagcaagcaatt 219  Q
    |||||||| ||| || ||||| |  ||||||||| ||||||||||||||| || |  |||||||  ||||||||||||||||||||||| | ||||||      
T  35371967 attcttgattctttgttgcttttatcaacgtgtaagctgaattgtaaagagaaat--gccaatgatgctgcacaagatcccattacacatggaagcaagg 35371870  T
Q  220 agcgatgcacacacctgaagcaatattacacacttc 255  Q
    ||| |||| ||||||| ||||||   ||||||||||    
T  35371869 agccatgctcacaccttaagcaaacatacacacttc 35371834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 35346303 - 35346257
Alignment:
Q  260 tatatataacacacaaactctccaatactaactcaactcacacaact 306  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||    
T  35346303 tatatataacacacaaactctccaatcctaactcagctcacacaact 35346257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 35348024 - 35348067
Alignment:
Q  252 cttcctgttatatataacacacaaactctccaatactaactcaa 295  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  35348024 cttcttgttatatataacacacaaactctccaatcctaactcaa 35348067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 35355947 - 35355909
Alignment:
Q  257 tgttatatataacacacaaactctccaatactaactcaa 295  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  35355947 tgttatatataacacacaaactctccaatcctaactcaa 35355909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 35371790 - 35371752
Alignment:
Q  257 tgttatatataacacacaaactctccaatactaactcaa 295  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  35371790 tgttatatataacacacaaactctccaattctaactcaa 35371752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 35374574 - 35374536
Alignment:
Q  257 tgttatatataacacacaaactctccaatactaactcaa 295  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  35374574 tgttatatataacacacaaactctccaatcctaactcaa 35374536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 35343352 - 35343399
Alignment:
Q  258 gttatatataacacacaaactctccaatactaactcaactcacacaact 306  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||    
T  35343352 gttatatataacaca-aaactctctaatcctaactcaactcacacaact 35343399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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