View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_23 (Length: 303)
Name: NF14841_low_23
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 129 - 292
Target Start/End: Complemental strand, 40833959 - 40833795
Alignment:
| Q |
129 |
tttcttagaaatgagatgagtctaactcaacaccacaaa-ccatttcgtcgccacttataaatatatttaattgatagttttatttgatgtgagacttgg |
227 |
Q |
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| T |
40833959 |
tttcttagaaatgagacgagtctaactcaacaccacaaaaccatttcgtcgccacttataaatatatttaagtgatagttttatttgatgtgagacttgg |
40833860 |
T |
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| Q |
228 |
aacacaattcaaatgcatgaaatcaacatttattttttattatgtggagtactaattgaagtttt |
292 |
Q |
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| T |
40833859 |
aacacaattcaaatgcatgaaatcaacatttattttttattatgtggagtactaattgaagtttt |
40833795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 40834120 - 40834004
Alignment:
| Q |
14 |
acctgtgtatgttttacttagctgctttcttctctatgttttctctctgttaagttaaccacggacacttctaattaagacgtgtctattgtctaatatg |
113 |
Q |
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| T |
40834120 |
acctgtgtatgttttacttagctgctttcttctctatgttttctctctgttaa-----ccacggacacttctaactaagacgtgtctagtgtctaatata |
40834026 |
T |
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| Q |
114 |
tgtcgttttctctcttttctta |
135 |
Q |
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| T |
40834025 |
tgtcgttttctctcttttctta |
40834004 |
T |
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