View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_25 (Length: 289)
Name: NF14841_low_25
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 46 - 279
Target Start/End: Original strand, 43706094 - 43706328
Alignment:
| Q |
46 |
gttaatactccactagctgaagttgatttggaacacacgannnnnnnn-cttcctccctctcgtttaataatgttnnnnnnnctcaattattgtttaaag |
144 |
Q |
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| T |
43706094 |
gttaatactccactagctgaagttgatttagaacacacgatttttttttcttcctccctctcgtttaataatgttaaaaaaactcaattattgtttaaag |
43706193 |
T |
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| Q |
145 |
ggatcgatctctattctaacatacttacacaacttataagnnnnnnnnnnnngacaaaaacctacacaacttgttgttaagtgacaaatttatttttgtc |
244 |
Q |
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||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43706194 |
ggatcgatctctattctaacatacttacataactgataagtttttattttttgacaaaaacctacacaacttgttgttaagtgacaaatttatttttgtc |
43706293 |
T |
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| Q |
245 |
aatagttttacaatttgtgttaatattgcattcat |
279 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43706294 |
aatagttttacaatttgtgttaatattgcattcat |
43706328 |
T |
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