View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_28 (Length: 275)
Name: NF14841_low_28
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 26688362 - 26688230
Alignment:
| Q |
56 |
cttcctctttctaagaattttctattcccaatcggggtctttttcttggacaattctcccctcaatgtctccatccatctcattgaataaatggtgaagt |
155 |
Q |
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| T |
26688362 |
cttcctctttctaagaattttctattcccaatcggggtctttttcttggacaattctcccctcaatgtctccatccatctcattgaataaatggtgaagt |
26688263 |
T |
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| Q |
156 |
taataacaaattattcgatgaagcaacaatatt |
188 |
Q |
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| T |
26688262 |
taataacaaaatattcgatgaagcaacaatatt |
26688230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 26677856 - 26678077
Alignment:
| Q |
36 |
gagtgagatgaatagtggaacttcctctttctaagaattttctattcccaatcggggtctttttcttggacaattctcccctcaatgtctccatccatct |
135 |
Q |
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| T |
26677856 |
gagtgacatgaatagtggaacttcctctttctacgaattttctattcccaatccgggtcttttgcttggacaattctcccctcaatgtc----tccatct |
26677951 |
T |
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| Q |
136 |
cattgaataaatggtgaagttaataacaaattattcgatgaagcaacaatatt------nnnnnnnnntcaataatatttttattttagtttgtaggtac |
229 |
Q |
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| T |
26677952 |
cattgaataaatggtgaagttaataacaaattattcaatgaagcaacaatattaaaaaaaaaaagtaatcaataaaatttttattttagtttgcaggtac |
26678051 |
T |
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| Q |
230 |
tctctccgtcctaaaatgattcatct |
255 |
Q |
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| T |
26678052 |
tctctccgtcctaaaatgattgatct |
26678077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 26682531 - 26682500
Alignment:
| Q |
224 |
aggtactctctccgtcctaaaatgattcatct |
255 |
Q |
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| T |
26682531 |
aggtactctctccgtcctaaaatgattcatct |
26682500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 26688216 - 26688184
Alignment:
| Q |
198 |
tcaataatatttttattttagtttgtaggtact |
230 |
Q |
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| T |
26688216 |
tcaataatatttttattttagtttgtagatact |
26688184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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