View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14841_low_29 (Length: 274)
Name: NF14841_low_29
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_29 |
 | |
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| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
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| [»] scaffold0247 (1 HSPs) |
| | |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0251 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 33698839 - 33698580
Alignment:
| Q |
1 |
atacaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33698839 |
atacaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattga |
33698740 |
T |
|
| Q |
101 |
tatgattctaaggttacacaaacttctagggaacaagtaagctatcaagttaattttgttttggttacctatcaaattaaatttttggtgacctaggtaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
33698739 |
tatgattctaaggttacacaaacttctagggaacaagtaagctatcaagttaattttgttttggttacctatcaagttaaacttttggtgacctaagtaa |
33698640 |
T |
|
| Q |
201 |
gagtataatat----atgtttgtatgtatagatggtcgctgattgctgcaaggcttccgg |
256 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33698639 |
gagtataatatatgtatgtatgtatgtatagatggtctttgattgctgcaaggcttccgg |
33698580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 33680240 - 33680120
Alignment:
| Q |
4 |
caggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatat |
103 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| || | |||||||||||||| |
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|
| T |
33680240 |
caggtttgaatagatgccggaaaagttgtagattgaggtgggtgaattatttaaaccctgcaatcaatagagaaagtttctcccatgatgaaattgatat |
33680141 |
T |
|
| Q |
104 |
gattctaaggttacacaaact |
124 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
33680140 |
gattctaaggctacacaaact |
33680120 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 33867174 - 33867043
Alignment:
| Q |
4 |
caggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatat |
103 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| ||||| | ||||||||| ||||||| |
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|
| T |
33867174 |
caggattgaataggtgccggaaaagttgtagattgaggtggttaaattatttaaaccccaccatcaatagagagagtttttctgaggatgaagttgatat |
33867075 |
T |
|
| Q |
104 |
gattctaaggttacacaaacttctagggaaca |
135 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||| |
|
|
| T |
33867074 |
gattttaaggttacacaagcttttagggaaca |
33867043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 33904736 - 33904606
Alignment:
| Q |
3 |
acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgata |
102 |
Q |
| |
|
||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||| |||| ||||| || ||||| || || ||||||||| |||||| |
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|
| T |
33904736 |
acaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaacccccaacatcaaaagggaaagctttgctgaggatgaagttgata |
33904637 |
T |
|
| Q |
103 |
tgattctaaggttacacaaacttctagggaa |
133 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
33904636 |
tgatgctaaggttacacaaacttctagggaa |
33904606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 33734676 - 33734537
Alignment:
| Q |
4 |
caggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatat |
103 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||||||| | ||||||||| ||| ||||| || ||||| || || ||||||||| ||||||| |
|
|
| T |
33734676 |
caggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttatgccctaacatcaaaagggaaagctttgctgaggatgaagttgatat |
33734577 |
T |
|
| Q |
104 |
gattctaaggttacacaaacttctagggaacaagtaagct |
143 |
Q |
| |
|
||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
33734576 |
gatcctaaggttacacaaacttctagggaataggtaagct |
33734537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 33763486 - 33763367
Alignment:
| Q |
24 |
aaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatatgattctaaggttacacaaac |
123 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||| ||||| || ||||| || || ||||||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
33763486 |
aaaagttgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagttgatctgatcctaaggttacaaaaac |
33763387 |
T |
|
| Q |
124 |
ttctagggaacaagtaagct |
143 |
Q |
| |
|
||||||| || | ||||||| |
|
|
| T |
33763386 |
ttctaggtaataggtaagct |
33763367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 33749142 - 33749031
Alignment:
| Q |
10 |
tgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatatgattct |
109 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||| |||||||||||||| | ||||||||||||| || | ||||||||| ||||||||| || |
|
|
| T |
33749142 |
tgaataggtgcagaaaaagttgtagattgagatggttaaattatttaaacccaaccatcaacagagaaatcttttctgaggatgaagctgatatgatcct |
33749043 |
T |
|
| Q |
110 |
aaggttacacaa |
121 |
Q |
| |
|
||||||||||| |
|
|
| T |
33749042 |
taggttacacaa |
33749031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 33821943 - 33821804
Alignment:
| Q |
4 |
caggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatat |
103 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||||||| | |||||||||||||| || ||||||||||| | |||| |||||| |||||| |
|
|
| T |
33821943 |
caggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaaccctaatattaacagagaaagcattaccgaagatgaagctgatat |
33821844 |
T |
|
| Q |
104 |
gattctaaggttacacaaacttctagggaacaagtaagct |
143 |
Q |
| |
|
||| ||||||||||||| || || ||||| | ||||||| |
|
|
| T |
33821843 |
gatcataaggttacacaatctcctggggaataggtaagct |
33821804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 149131 - 149007
Alignment:
| Q |
9 |
ttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgatatgattc |
108 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||| |||||||||| |||| ||||| || ||||| || || ||||||||| | |||||||| | |
|
|
| T |
149131 |
ttgaataggtgccgcaaaagctgtagattgaggtggttaaattatttaagccccaacatcaaaagggaaagctttgctgaggatgaagtcgatatgatcc |
149032 |
T |
|
| Q |
109 |
taaggttacacaaacttctagggaa |
133 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
149031 |
taaggttacacaaacttctagggaa |
149007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 5470127 - 5470249
Alignment:
| Q |
2 |
tacaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgat |
101 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||| ||| ||||| ||| |||| || | ||||||||| ||||| |
|
|
| T |
5470127 |
tacaggattgaatagatgtcgaaaaagttgtagattgaggtggataaattatttaaagcccaacatcaatagaaaaagcttttctgaggatgaagttgat |
5470226 |
T |
|
| Q |
102 |
atgattctaaggttacacaaact |
124 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
5470227 |
atgatcctaaggttacacaaact |
5470249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 90070 - 90191
Alignment:
| Q |
3 |
acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgata |
102 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||| |||||||| || ||||||||||| | ||||||| |||||| || | ||||||||| |||||| |
|
|
| T |
90070 |
acaggattaaataggtgtcgaaaaagttgtagattaaggtggtttaactatttaaacccaaccatcaacaaagaaagattttctgaggatgaagttgata |
90169 |
T |
|
| Q |
103 |
tgattctaaggttacacaaact |
124 |
Q |
| |
|
|||| ||||||||||| ||||| |
|
|
| T |
90170 |
tgatcctaaggttacaaaaact |
90191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 21873 - 22013
Alignment:
| Q |
3 |
acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgata |
102 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||| ||| |||||||| || | ||| | |||||||| ||||| |
|
|
| T |
21873 |
acaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaatccctacatcaacagggagaatttttctaaggatgaagttgatt |
21972 |
T |
|
| Q |
103 |
tgattctaaggttacacaaacttctagggaacaagtaagct |
143 |
Q |
| |
|
||||||||||||||||||| |||||||| || | ||||||| |
|
|
| T |
21973 |
tgattctaaggttacacaaccttctaggcaataggtaagct |
22013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 21306178 - 21306051
Alignment:
| Q |
3 |
acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccccgcaatcaacagagaaagtttcgccgaggatgaaattgata |
102 |
Q |
| |
|
||||| |||||||| || | ||||||||||||||||||||||| ||||| |||| |||| |||||||||| ||| || | ||||||||| ||| |
|
|
| T |
21306178 |
acaggattgaatagatgcagaaaaagttgtagattgaggtggttaaattacttaagccccaacatcaacagaggaagattttctgaggatgaagaagatt |
21306079 |
T |
|
| Q |
103 |
tgattctaaggttacacaaacttctagg |
130 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |
|
|
| T |
21306078 |
tgatcctaaggttacacaaactactagg |
21306051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 24288 - 24346
Alignment:
| Q |
3 |
acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccc |
61 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| || ||| | |||||||||||||| |
|
|
| T |
24288 |
acaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccc |
24346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 9870 - 9908
Alignment:
| Q |
15 |
aggtgtcggaaaagttgtagattgaggtggttgaattat |
53 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
9870 |
aggtgtgggaagagttgtagattgaggtggttgaattat |
9908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 237215 - 237173
Alignment:
| Q |
15 |
aggtgtcggaaaagttgtagattgaggtggttgaattatttaa |
57 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||||||| |
|
|
| T |
237215 |
aggtgtgggaagagttgtagattgaggtggctgaattatttaa |
237173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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