View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14841_low_34 (Length: 250)
Name: NF14841_low_34
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_34 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 22760577 - 22760811
Alignment:
| Q |
16 |
atgctgccatatattagtacctttcgccttagtgaaaacctagaacactagaaacctacactttcctaagtaatggtgtctaatgacatatcccttacta |
115 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22760577 |
atgctgccgtatattagcacctttcaccttagtgaaaacctagaatactggaaacctacaatttcctaagcaatggtgtctaatgacatatcccttacta |
22760676 |
T |
|
| Q |
116 |
cattagtaataaacaatggtaataagagaaaatcaatcttcaaataaggccataaaaattgataataagaagaataatatcatatggattaactcgggcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22760677 |
cattagtaataaacaatggtaataagagaaaatcaatcttcaaataaggccataaaaattgataataagaagaataatatcatatggattaactcgggcg |
22760776 |
T |
|
| Q |
216 |
gcaagagataacctgtgctctgctttttccagagc |
250 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22760777 |
gcaagagataacctgtgctctactttttccagagc |
22760811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 1490122 - 1490353
Alignment:
| Q |
16 |
atgctgccatatattagtacctttcgccttagtgaaaacctagaacactagaaacctacactttcctaagtaatggtgtctaatgacatatcccttacta |
115 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||| ||||||||| |||||| |||||||||||||| ||| || ||||||||| |||||||||||||||| |
|
|
| T |
1490122 |
atgctgacatatattattacctttcaccttattgaaaacctggaacaccagaaacctacacttccctgagcaatggtgtccaatgacatatcccttat-- |
1490219 |
T |
|
| Q |
116 |
cattagtaataaacaatggtaataagagaaaatcaatcttcaaataaggccataaaaattgataataagaagaataatatcatatggattaactcgggcg |
215 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1490220 |
-atcagtaataaacaatagtaataagagaaaatcaatcttcaaatagggccataaaaatggataataagaagaataatatcatatggattaactcgggcg |
1490318 |
T |
|
| Q |
216 |
gcaagagataacctgtgctctgctttttccagagc |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1490319 |
gcaagagattacctgtgctctgctttttccagagc |
1490353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University