View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14841_low_35 (Length: 249)

Name: NF14841_low_35
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14841_low_35
NF14841_low_35
[»] chr2 (2 HSPs)
chr2 (10-232)||(15766237-15766459)
chr2 (44-93)||(36052371-36052420)
[»] chr6 (1 HSPs)
chr6 (22-138)||(5894272-5894389)
[»] scaffold0527 (2 HSPs)
scaffold0527 (20-139)||(2176-2296)
scaffold0527 (20-139)||(10239-10359)
[»] chr4 (2 HSPs)
chr4 (16-112)||(1006874-1006968)
chr4 (24-78)||(32916557-32916611)
[»] chr5 (1 HSPs)
chr5 (21-139)||(25034584-25034713)
[»] chr3 (2 HSPs)
chr3 (37-137)||(21141432-21141533)
chr3 (10-94)||(41251210-41251294)
[»] chr1 (2 HSPs)
chr1 (151-204)||(45691529-45691582)
chr1 (10-65)||(16516031-16516086)
[»] chr8 (1 HSPs)
chr8 (19-61)||(7248513-7248555)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 15766237 - 15766459
Alignment:
Q  10 aaatcttatccattgaaaaataaatgtatttgagaaattaaatgttaaaatcaagaaagagaagatgttcaatgacttagatttggcacccgagaaaact 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  15766237 aaatcttatccattgaaaaataaatgtatttgagaaattaaatgttaaaatcaggagagagaagatgtttaatgacttagatttggcacccgagaaaact 15766336  T
Q  110 gcaatattctaacaggagacaatctattccaaataaattgttaattgtcttggatttgataatttttgctttctcttcttataaaaaagaccggatagag 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15766337 gcaatattctaacacgagacaatctattccaaataaattgttaattatcttggatttgataatttttgctttctcttcttataaaaaagaccggatagag 15766436  T
Q  210 taatactatacccgcctaatagc 232  Q
    || ||||||||||||||||||||    
T  15766437 tagtactatacccgcctaatagc 15766459  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 36052371 - 36052420
Alignment:
Q  44 aaattaaatgttaaaatcaagaaagagaagatgttcaatgacttagattt 93  Q
    |||||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  36052371 aaattaaatgttaaaatcaagagagataagatgtttgatgacttagattt 36052420  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 5894272 - 5894389
Alignment:
Q  22 ttgaaaaataaatgtatttgagaaattaaatgttaaaatcaagaaagagaagatgttcaatgacttagatttggcacccgagaaaactgca-atattcta 120  Q
    |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||  |  || | ||||||| |||||||     
T  5894272 ttgaaaaataaatgcatttgataaattaaatgttaaaatcaagagagagaagatgtttaatgacttagatttggttctggaaataactgcagatattctc 5894371  T
Q  121 acaggagacaatctattc 138  Q
    |||| |||||||||||||    
T  5894372 acagaagacaatctattc 5894389  T

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Target: scaffold0527 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 2176 - 2296
Alignment:
Q  20 cattgaaaaataaatgtatttgagaaattaaatgttaaaatcaagaaagagaagatgttcaatgacttagatttggcacccgagaaaactgca-atattc 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| | | |||| ||| |||||||||||||||||||   | ||||||||| ||||||    
T  2176 cattgaaaaataaatgcatttgagaaattaaatgttaaaatcaagagaaataagaggtttaatgacttagatttggcactgaaaaaaactgcagatattc 2275  T
Q  119 taacaggagacaatctattcc 139  Q
    | ||| |||||||||| ||||    
T  2276 tcacaagagacaatcttttcc 2296  T

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Target: scaffold0527; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 10239 - 10359
Alignment:
Q  20 cattgaaaaataaatgtatttgagaaattaaatgttaaaatcaagaaagagaagatgttcaatgacttagatttggcacccgagaaaactgca-atattc 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| | | |||| ||| |||||||||||||||||||   | ||||||||| ||||||    
T  10239 cattgaaaaataaatgcatttgagaaattaaatgttaaaatcaagagaaataagaggtttaatgacttagatttggcactgaaaaaaactgcagatattc 10338  T
Q  119 taacaggagacaatctattcc 139  Q
    | ||| |||||||||| ||||    
T  10339 tcacaagagacaatcttttcc 10359  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 1006874 - 1006968
Alignment:
Q  16 tatccattgaaaaataaatgtatttgagaaattaaatgttaaaatcaagaaagagaagatgttcaatgacttagatttggcacccgagaaaactgca 112  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||  ||||| |||||| ||||||||  ||||| |||| ||||||||||||    
T  1006874 tatctattgaaaaataaatgtatttgaaaaattaaatgttaaaatcaag--agagatgatgtttaatgacttgaatttgacaccggagaaaactgca 1006968  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 32916611 - 32916557
Alignment:
Q  24 gaaaaataaatgtatttgagaaattaaatgttaaaatcaagaaagagaagatgtt 78  Q
    |||||||||||| |||||||||||||||| ||||||| |||| |||||| |||||    
T  32916611 gaaaaataaatgcatttgagaaattaaatattaaaattaagagagagaatatgtt 32916557  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 25034584 - 25034713
Alignment:
Q  21 attgaaaaataaatgtatttgagaaattaaatgttaaaatcaagaaagagaa----------gatgttcaatgacttagatttggcacccgagaaaactg 110  Q
    |||||||||||| || ||| ||||||||||||||||||||||||| ||||||          |||||| |||||||||||||| ||||| ||| ||||||    
T  25034584 attgaaaaataagtgcattcgagaaattaaatgttaaaatcaagagagagaagatgtttaatgatgtttaatgacttagatttagcaccggaggaaactg 25034683  T
Q  111 ca-atattctaacaggagacaatctattcc 139  Q
    || ||||||| |||||||||||||||||||    
T  25034684 cagatattctgacaggagacaatctattcc 25034713  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 21141533 - 21141432
Alignment:
Q  37 atttgagaaattaaatgttaaaatcaagaaagagaagatgttcaatgacttagatttggcacccgagaaaactgca-atattctaacaggagacaatcta 135  Q
    ||||||||||||||||||||||||| ||| | |||||||||| ||||||||||| ||  | | |||||||||| || | ||||| |||||||||||||||    
T  21141533 atttgagaaattaaatgttaaaatcgagagacagaagatgtttaatgacttagacttaaccctcgagaaaacttcagaaattctcacaggagacaatcta 21141434  T
Q  136 tt 137  Q
    ||    
T  21141433 tt 21141432  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 41251210 - 41251294
Alignment:
Q  10 aaatcttatccattgaaaaataaatgtatttgagaaattaaatgttaaaatcaagaaagagaagatgttcaatgacttagatttg 94  Q
    ||||| || |||||||||||||||| ||||| |||| |||||||||||||||| || |||||| ||||| ||||| |||||||||    
T  41251210 aaatcctacccattgaaaaataaatttatttaagaagttaaatgttaaaatcatgagagagaaaatgtttaatgatttagatttg 41251294  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 45691582 - 45691529
Alignment:
Q  151 taattgtcttggatttgataatttttgctttctcttcttataaaaaagaccgga 204  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  45691582 taattgtcttggttttgatgatttttgatttctcttcttataaaaaagatcgga 45691529  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 16516031 - 16516086
Alignment:
Q  10 aaatcttatccattgaaaaataaatgtatttgagaaattaaatgttaaaatcaaga 65  Q
    ||||| |||||||||||||||||||  |||||| ||||||||||||| ||||||||    
T  16516031 aaatcctatccattgaaaaataaatacatttgaaaaattaaatgttacaatcaaga 16516086  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 7248555 - 7248513
Alignment:
Q  19 ccattgaaaaataaatgtatttgagaaattaaatgttaaaatc 61  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  7248555 ccattaaaaaataaatgcatttgagaaattaaatgttaaaatc 7248513  T

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