View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_36 (Length: 239)
Name: NF14841_low_36
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22760859 - 22761079
Alignment:
| Q |
1 |
tttttggtaccgaaaaacataaaacgacaacaagcttaccaatgtaaccgagagttagcggtaacacactaagcgtacagggagaaaggctggttacaag |
100 |
Q |
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| T |
22760859 |
tttttggtaccgaaaaacgtaaaacgacaacaagcttaccaatgtaaccgagagttagtggtaacacactaagcgtacagggagaaaggctggttacaag |
22760958 |
T |
|
| Q |
101 |
tcctgccccataaattacagccaaactgtaaagttgaataagaagcatataaaaaaccataaacacaagtttcaattattaggggaaatgacagaaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22760959 |
tcctgccccataaattacagccaaactgtaaagttgaataagaagcatataaaaaaccataaacacaagtttcaattattaggggaaatgatagaaataa |
22761058 |
T |
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| Q |
201 |
aatcattcggcggaatttata |
221 |
Q |
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||||||||||||||||||||| |
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| T |
22761059 |
aatcattcggcggaatttata |
22761079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 1490432 - 1490587
Alignment:
| Q |
66 |
acactaagcgtacagggagaaaggctggttacaagtcctgccccataaattacagccaaactgtaaagttgaataagaagcatataaaaaaccataaaca |
165 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1490432 |
acactaagcgtacagggagaaaggctggttacatgtcctgccctataaattacagccaaactgtaaagttgaataagaagcatataaaaaaccataaaca |
1490531 |
T |
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| Q |
166 |
caagtttcaattattaggggaaatgacagaaataaaatcattcggcggaatttata |
221 |
Q |
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|||||||||||||| || |||||||| ||| |||||||| || |||||||||||| |
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| T |
1490532 |
caagtttcaattatcagaggaaatgatagacataaaatcgttgagcggaatttata |
1490587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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