View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14841_low_4 (Length: 510)
Name: NF14841_low_4
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 219 - 373
Target Start/End: Original strand, 39748323 - 39748477
Alignment:
| Q |
219 |
gagaaaccgtactgtgtttcttttataacnnnnnnngaaactgtataagttgaatgaatatttaggtagtttaactactactactaatgttagaaggaga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39748323 |
gagaaaccgtactgtgtttcttttataacaaaaaaagaaactgtataagttgaatgaatatttcggtagtttaactactgctactaatgttagaaggaga |
39748422 |
T |
|
| Q |
319 |
ctgagttacagttttgtttcaattaaccacacgtggactttgaaatctggaactg |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39748423 |
ctgagttacagttttgtttcaattaaccacacgtggactttgaaatctggaactg |
39748477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 447 - 495
Target Start/End: Original strand, 39748550 - 39748598
Alignment:
| Q |
447 |
gttaaatcatcaaattggagcttaagaacaaacaaactcactttccctt |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39748550 |
gttaaatcatcaaattggagcttaagaacaaacaaactcactttccctt |
39748598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University