View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_8 (Length: 423)
Name: NF14841_low_8
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 25 - 406
Target Start/End: Complemental strand, 14009116 - 14008734
Alignment:
| Q |
25 |
ttcagcgttaaaatcatgaatggtttaccaatatgttagtaatcatgttatctaattgttcacnnnnnnnnctcctaactaactatactaaataattgaa |
124 |
Q |
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| T |
14009116 |
ttcagcgttaaaatcatgaatggtttaccaatatgttagtaatcatgttatctaattattcacttttttttctcctaactaactatactaaataattgaa |
14009017 |
T |
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| Q |
125 |
cct-aacatataacactgaagttgctatcagtaaataaaattcaaaatattctatagagaaaccattcattaagtttactattagcaaacatagttcaag |
223 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14009016 |
ccttaacatataacactgaagttgctatcagtaaataaaattcaaaatattctatagagaaaccattcattaagtttactattagcaaacatagttcaag |
14008917 |
T |
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| Q |
224 |
aaaacatagataaatattctgtagagaaatgcacaaaataattcatagatggtgaaatcaaaatctgatttaaaagtgagactaccttgatttccctaat |
323 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14008916 |
aaaacatagataaatattctatagagaaatgcacaaaataattcatagatggtgaaatcaaaatctgatttaaaagtgagactaccttgattttcctaat |
14008817 |
T |
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| Q |
324 |
tgctctatggctttttcaacttcagtcccatgttcttggaagcatgagacctatcctaatattcatgttgcagcatgcataaa |
406 |
Q |
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| T |
14008816 |
tgctctatggctttttcaacttcagtcccatgttcttggaagcatgagacctatcctaatattcatgttgcagcatgcataaa |
14008734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 40910644 - 40910504
Alignment:
| Q |
35 |
aaatcatgaatggtttaccaatatgttagtaatcatgttatctaattgttcacnnnnnnnnctcctaactaactatactaaat-aattgaacc-taacat |
132 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||| ||||||||| |||||| |
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| T |
40910644 |
aaatcatgaatggtttatcaatatgttagtaatcatgttatcgaatggttcatttttttttctcctaactaaccatactaaataaattgaaccttaacat |
40910545 |
T |
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| Q |
133 |
ataacactgaagttgctatcagtaaataaaattcaaaatat |
173 |
Q |
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| T |
40910544 |
acaacactgaggttgctattagtaaatagaactcaaaatat |
40910504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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