View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14841_low_9 (Length: 403)
Name: NF14841_low_9
Description: NF14841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14841_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 200 - 385
Target Start/End: Complemental strand, 48415604 - 48415412
Alignment:
| Q |
200 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgtt-------ctgtacaatg |
292 |
Q |
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| T |
48415604 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctgataactgtacaatg |
48415505 |
T |
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| Q |
293 |
agcccggaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtnnnnnnntatctatcttgacattgtatatgaatt |
385 |
Q |
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| T |
48415504 |
agcccagaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtaaaaaaatatctatcttgacattgtatatgaatt |
48415412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 48415809 - 48415684
Alignment:
| Q |
1 |
tttttatcaatcacatgaggcacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgtaaatcgttacatcgaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48415809 |
tttttatcaatcacatgaggtacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgtaaatcgttacattgaa |
48415710 |
T |
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| Q |
101 |
tgcgaaggatccaatgccagagtatc |
126 |
Q |
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| T |
48415709 |
tgcgaaggatccaatgccagagtatc |
48415684 |
T |
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