View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14842_low_1 (Length: 303)
Name: NF14842_low_1
Description: NF14842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14842_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 13871962 - 13872165
Alignment:
| Q |
18 |
agcatcaaatattgctaatttattaacattaaatatccatcaataacaaacttgaaa----tatatatatttgattaaaggaagagaatcgcgcacccat |
113 |
Q |
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| T |
13871962 |
agcatcaaatattgctgacttattgatatgaaaaatccattaataacaaacttgaaagaaatatatatatttgattaaaggaagagaatcgcgcacccat |
13872061 |
T |
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| Q |
114 |
ctccatcaaacctgcaaaaaatagaaatggaaagcttgatatgagtccagataaacttaaataccaaaccttcctaaaagtaactatatgtaaatgaaaa |
213 |
Q |
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| T |
13872062 |
ctccatcaaacctgcaaaaaatagaaatggaaagcttgatttgagtccagataaacttaaataccaaaccttcctaaaagtaactatatgtaaatgaaaa |
13872161 |
T |
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| Q |
214 |
tcaa |
217 |
Q |
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|||| |
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| T |
13872162 |
tcaa |
13872165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 13853140 - 13853267
Alignment:
| Q |
90 |
aaaggaagagaatcgcgcacccatctccatcaaacctgcaaaaaatagaaatggaaagcttgatatgagtccagataaacttaaataccaaaccttccta |
189 |
Q |
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| T |
13853140 |
aaaggaagagaatcacgcacccatctccatcaaacctgcaaaaaatagaaatggaaagcttgatatgagtccagataaacttaaataccaaaccttccta |
13853239 |
T |
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| Q |
190 |
aaagtaactatatgtaaatgaaaatcaa |
217 |
Q |
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| T |
13853240 |
aaagtaactatatgtaaatgaaaatcaa |
13853267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 13853086 - 13853142
Alignment:
| Q |
18 |
agcatcaaatattgctaatttattaacattaaatatccatcaataacaaacttgaaa |
74 |
Q |
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| T |
13853086 |
agcatcaaatattgctaacttattgatatgaaaaatccattaataacaaacttgaaa |
13853142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 13894547 - 13894603
Alignment:
| Q |
89 |
taaaggaagagaatcgcgca----cccatctccatcaaacctgcaaaaaatagaaatg |
142 |
Q |
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| T |
13894547 |
taaaggaagagaatcgcgcacgcacccatctccatcaaacctgc-aaaaatagaaatg |
13894603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 13901733 - 13901761
Alignment:
| Q |
105 |
cgcacccatctccatcaaacctgcaaaaa |
133 |
Q |
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| T |
13901733 |
cgcacccatctccatcaaacctgcaaaaa |
13901761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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